RNA–Protein interactions for RNA: ENST00000567635.5

SF3B3-209, Transcript of splicing factor 3b subunit 3, human

TSL 5

Gene SF3B3, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-209	ENST00000567635	RYDEN	Q9NUL5	291 aa	Known RBP	6.93	□□□□□ -1.3
SF3B3-209	ENST00000567635	GULP1	Q9UBP9	304 aa		6.93	□□□□□ -1.3
SF3B3-209	ENST00000567635	KL	Q9UEF7	1012 aa		6.93	□□□□□ -1.3
SF3B3-209	ENST00000567635	PADI4	Q9UM07	663 aa		6.93	□□□□□ -1.3
SF3B3-209	ENST00000567635	DOLK	Q9UPQ8	538 aa		6.93	□□□□□ -1.3
SF3B3-209	ENST00000567635	PPIL1	Q9Y3C6	166 aa		6.93	□□□□□ -1.3
SF3B3-209	ENST00000567635	RAI2	Q9Y5P3	530 aa		6.93	□□□□□ -1.3
SF3B3-209	ENST00000567635	DGKB	Q9Y6T7	804 aa		6.93	□□□□□ -1.3
SF3B3-209	ENST00000567635	SPEG	Q15772	3267 aa		6.93	□□□□□ -1.3
SF3B3-209	ENST00000567635	ZZEF1	O43149	2961 aa		6.93	□□□□□ -1.3
SF3B3-209	ENST00000567635	EME2	A4GXA9	379 aa	Predicted RBP	6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	TMEM202	A6NGA9	273 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	NPIPB15	A6NHN6	443 aa	Predicted RBP	6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	C3orf70	A6NLC5	250 aa	Predicted RBP	6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	PSMD11	O00231	422 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	HEXIM1	O94992	359 aa	Known RBP	6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	MAP3K6	O95382	1288 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	JCHAIN	P01591	159 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	PDHA1	P08559	390 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	ZFX	P17010	805 aa	Predicted RBP	6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	CTPS1	P17812	591 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	GM2A	P17900	193 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	CA4	P22748	312 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	SLC1A1	P43005	524 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	MAGEA1	P43355	309 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	EPHB1	P54762	984 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	DSC2	Q02487	901 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	GBE1	Q04446	702 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	PTPRR	Q15256	657 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	CNGA3	Q16281	694 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	C6orf132	Q5T0Z8	1188 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	ALG1L	Q6GMV1	187 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	GUSBP11	Q6P575	273 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635		Q6ZVL8	140 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	USP45	Q70EL2	814 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	EFL1	Q7Z2Z2	1120 aa	Known RBP	6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	HSD11B1L	Q7Z5J1	315 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	VSIG1	Q86XK7	387 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	RHOT1	Q8IXI2	618 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	SLC35F3	Q8IY50	421 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	PLD5	Q8N7P1	536 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	ARRDC2	Q8TBH0	407 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	TRAF3IP1	Q8TDR0	691 aa	Predicted RBP	6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	LRRN4	Q8WUT4	740 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	NAT6	Q93015	286 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	FUBP1	Q96AE4	644 aa	Known RBP	6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	NUS1	Q96E22	293 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	ZNF830	Q96NB3	372 aa	Predicted RBP	6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	DEPDC7	Q96QD5	511 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	MCCC1	Q96RQ3	725 aa	Predicted RBP	6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	LGR4	Q9BXB1	951 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	GRPEL1	Q9HAV7	217 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	CYP4F12	Q9HCS2	524 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	PHPT1	Q9NRX4	125 aa	Predicted RBP	6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	DDX56	Q9NY93	547 aa	Known RBP	6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	DTL	Q9NZJ0	730 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	GPR34	Q9UPC5	381 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	CHKB	Q9Y259	395 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	RAX	Q9Y2V3	346 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	HEY1	Q9Y5J3	304 aa		6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	COL27A1	Q8IZC6	1860 aa	Predicted RBP	6.92	□□□□□ -1.3
SF3B3-209	ENST00000567635	SCN8A	Q9UQD0	1980 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635		A0A0J9YYE9	177 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	APOL1	O14791	398 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	FZD6	O60353	706 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	CS	O75390	466 aa	Known RBP	6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	LCA5L	O95447	670 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	PRL	P01236	227 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	TRBC1	P01850	177 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	CELA2B	P08218	269 aa	Predicted RBP	6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	MYCLP1	P12525	358 aa	Predicted RBP	6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	TNNT1	P13805	278 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	ZNF30	P17039	623 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	COMT	P21964	271 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	TGM2	P21980	687 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	LHCGR	P22888	699 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	TEAD1	P28347	426 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	ETV3	P41162	512 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	NOP2	P46087	812 aa	Known RBP	6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	HADHB	P55084	474 aa	Known RBP	6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	RPL26	P61254	145 aa	Known RBP	6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	PTS	Q03393	145 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	DPT	Q07507	201 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	PPID	Q08752	370 aa	Known RBP	6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	NIPAL4	Q0D2K0	466 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	AP1B1	Q10567	949 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	IHH	Q14623	411 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	PDK1	Q15118	436 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	TCEA2	Q15560	299 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	PERM1	Q5SV97	790 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	KCTD16	Q68DU8	428 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	SLC9A4	Q6AI14	798 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	OGFOD3	Q6PK18	319 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	C19orf48	Q6RUI8	117 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	CRTC1	Q6UUV9	634 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	NYAP1	Q6ZVC0	841 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	TECPR1	Q7Z6L1	1165 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	TAF8	Q7Z7C8	310 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	TSPAN33	Q86UF1	283 aa		6.91	□□□□□ -1.3
SF3B3-209	ENST00000567635	NLRP8	Q86W28	1048 aa		6.91	□□□□□ -1.3

Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms