RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 ATP5DP30049 168 aa30.61■■■□□ 2.49
CTCF-203ENST00000566078 PARS2Q7L3T8 475 aaKnown RBP30.61■■■□□ 2.49
CTCF-203ENST00000566078 TSPAN33Q86UF1 283 aa30.61■■■□□ 2.49
CTCF-203ENST00000566078 KRT222Q8N1A0 295 aa30.61■■■□□ 2.49
CTCF-203ENST00000566078 FAM167BQ9BTA0 163 aa30.61■■■□□ 2.49
CTCF-203ENST00000566078 MFSD1Q9H3U5 465 aa30.61■■■□□ 2.49
CTCF-203ENST00000566078 SUDS3Q9H7L9 328 aaPredicted RBP30.61■■■□□ 2.49
CTCF-203ENST00000566078 BPIFA1Q9NP55 256 aa30.61■■■□□ 2.49
CTCF-203ENST00000566078 SLC7A4O43246 635 aa30.6■■■□□ 2.49
CTCF-203ENST00000566078 CLDN7O95471 211 aa30.6■■■□□ 2.49
CTCF-203ENST00000566078 XPAP23025 273 aaPredicted RBP30.6■■■□□ 2.49
CTCF-203ENST00000566078 CDKN3Q16667 212 aa30.6■■■□□ 2.49
CTCF-203ENST00000566078 TNFAIP8L3Q5GJ75 292 aa30.6■■■□□ 2.49
CTCF-203ENST00000566078 PACS1Q6VY07 963 aa30.6■■■□□ 2.49
CTCF-203ENST00000566078 KCNV2Q8TDN2 545 aa30.6■■■□□ 2.49
CTCF-203ENST00000566078 FAM3CQ92520 227 aa30.6■■■□□ 2.49
CTCF-203ENST00000566078 TLCD1Q96CP7 247 aa30.6■■■□□ 2.49
CTCF-203ENST00000566078 TXNDC16Q9P2K2 825 aa30.6■■■□□ 2.49
CTCF-203ENST00000566078 B4GALT6Q9UBX8 382 aa30.6■■■□□ 2.49
CTCF-203ENST00000566078 PKP3Q9Y446 797 aa30.6■■■□□ 2.49
CTCF-203ENST00000566078 CCDC162PA2VCL2 907 aa30.59■■■□□ 2.49
CTCF-203ENST00000566078 OR51F1A6NGY5 319 aa30.59■■■□□ 2.49
CTCF-203ENST00000566078 F7P08709 466 aaPredicted RBP30.59■■■□□ 2.49
CTCF-203ENST00000566078 TIMP2P16035 220 aa30.59■■■□□ 2.49
CTCF-203ENST00000566078 ITGB7P26010 798 aa30.59■■■□□ 2.49
CTCF-203ENST00000566078 NTSR1P30989 418 aa30.59■■■□□ 2.49
CTCF-203ENST00000566078 HMGCLP35914 325 aa30.59■■■□□ 2.49
CTCF-203ENST00000566078 METAP1P53582 386 aa30.59■■■□□ 2.49
CTCF-203ENST00000566078 ZP2Q05996 745 aa30.59■■■□□ 2.49
CTCF-203ENST00000566078 CRTC1Q6UUV9 634 aa30.59■■■□□ 2.49
CTCF-203ENST00000566078 PTAR1Q7Z6K3 402 aaPredicted RBP30.59■■■□□ 2.49
CTCF-203ENST00000566078 MMAAQ8IVH4 418 aaKnown RBP30.59■■■□□ 2.49
CTCF-203ENST00000566078 CNTN4Q8IWV2 1026 aa30.59■■■□□ 2.49
CTCF-203ENST00000566078 OTUD6BQ8N6M0 293 aa30.59■■■□□ 2.49
CTCF-203ENST00000566078 ARRDC3Q96B67 414 aa30.59■■■□□ 2.49
CTCF-203ENST00000566078 EID2BQ96D98 161 aa30.59■■■□□ 2.49
CTCF-203ENST00000566078 CDKN2AIPNLQ96HQ2 116 aa30.59■■■□□ 2.49
CTCF-203ENST00000566078 CPNE1Q99829 537 aa30.59■■■□□ 2.49
CTCF-203ENST00000566078 NSMCE4AQ9NXX6 385 aa30.59■■■□□ 2.49
CTCF-203ENST00000566078 IL17CQ9P0M4 197 aa30.59■■■□□ 2.49
CTCF-203ENST00000566078 IQANK1A0A1B0GTG1 560 aa30.58■■■□□ 2.49
CTCF-203ENST00000566078 SHISA7A6NL88 538 aa30.58■■■□□ 2.49
CTCF-203ENST00000566078 FOXO6A8MYZ6 492 aa30.58■■■□□ 2.49
CTCF-203ENST00000566078 C1QTNF3-AMACRE9PGA6 284 aa30.58■■■□□ 2.49
CTCF-203ENST00000566078 GOT2P00505 430 aaKnown RBP30.58■■■□□ 2.49
CTCF-203ENST00000566078 KRT15P19012 456 aa30.58■■■□□ 2.49
CTCF-203ENST00000566078 PSMA3P25788 255 aa30.58■■■□□ 2.49
CTCF-203ENST00000566078 NFKBIAP25963 317 aa30.58■■■□□ 2.49
CTCF-203ENST00000566078 PSMD8P48556 350 aa30.58■■■□□ 2.49
CTCF-203ENST00000566078 CAMK2GQ13555 558 aaPredicted RBP30.58■■■□□ 2.49
CTCF-203ENST00000566078 ZNF470Q6ECI4 717 aa30.58■■■□□ 2.49
CTCF-203ENST00000566078 SDE2Q6IQ49 451 aa30.58■■■□□ 2.49
CTCF-203ENST00000566078 NEPROQ6NW34 567 aa30.58■■■□□ 2.49
CTCF-203ENST00000566078 STRA8Q7Z7C7 330 aa30.58■■■□□ 2.49
CTCF-203ENST00000566078 PPP1R16AQ96I34 528 aa30.58■■■□□ 2.49
CTCF-203ENST00000566078 PCDH12Q9NPG4 1184 aa30.58■■■□□ 2.49
CTCF-203ENST00000566078 OGFRQ9NZT2 677 aa30.58■■■□□ 2.49
CTCF-203ENST00000566078 FKBPLQ9UIM3 349 aa30.58■■■□□ 2.49
CTCF-203ENST00000566078 PLXNA2O75051 1894 aa30.58■■■□□ 2.49
CTCF-203ENST00000566078 SYNCRIPO60506 623 aaKnown RBP30.58■■■□□ 2.49
CTCF-203ENST00000566078 KLF8O95600 359 aaPredicted RBP30.58■■■□□ 2.49
CTCF-203ENST00000566078 CYP2A6P11509 494 aaPredicted RBP30.58■■■□□ 2.49
CTCF-203ENST00000566078 LHCGRP22888 699 aa30.58■■■□□ 2.49
CTCF-203ENST00000566078 GP5P40197 560 aa30.58■■■□□ 2.49
CTCF-203ENST00000566078 SLC1A2P43004 574 aa30.58■■■□□ 2.49
CTCF-203ENST00000566078 SERPINB9P50453 376 aa30.58■■■□□ 2.49
CTCF-203ENST00000566078 MAGOHP61326 146 aaKnown RBP30.58■■■□□ 2.49
CTCF-203ENST00000566078 MLF2Q15773 248 aaPredicted RBP30.58■■■□□ 2.49
CTCF-203ENST00000566078 LRRC66Q68CR7 880 aa30.58■■■□□ 2.49
CTCF-203ENST00000566078 TTC7BQ86TV6 843 aa30.58■■■□□ 2.49
CTCF-203ENST00000566078 DENND6AQ8IWF6 608 aa30.58■■■□□ 2.49
CTCF-203ENST00000566078 IL17RCQ8NAC3 791 aa30.58■■■□□ 2.49
CTCF-203ENST00000566078 GABPB2Q8TAK5 448 aaPredicted RBP30.58■■■□□ 2.49
CTCF-203ENST00000566078 CALML6Q8TD86 181 aa30.58■■■□□ 2.49
CTCF-203ENST00000566078 THEGQ9P2T0 379 aa30.58■■■□□ 2.49
CTCF-203ENST00000566078 VIPR1P32241 457 aa30.57■■■□□ 2.48
CTCF-203ENST00000566078 HADHAP40939 763 aa30.57■■■□□ 2.48
CTCF-203ENST00000566078 AFTPHQ6ULP2 937 aa30.57■■■□□ 2.48
CTCF-203ENST00000566078 TAOK1Q7L7X3 1001 aa30.57■■■□□ 2.48
CTCF-203ENST00000566078 TRMT11Q7Z4G4 463 aaKnown RBP30.57■■■□□ 2.48
CTCF-203ENST00000566078 GABRG3Q99928 467 aa30.57■■■□□ 2.48
CTCF-203ENST00000566078 DYRK4Q9NR20 520 aa30.57■■■□□ 2.48
CTCF-203ENST00000566078 PLXNB3Q9ULL4 1909 aa30.57■■■□□ 2.48
CTCF-203ENST00000566078 CD72P21854 359 aa30.56■■■□□ 2.48
CTCF-203ENST00000566078 CTBP1Q13363 440 aa30.56■■■□□ 2.48
CTCF-203ENST00000566078 BMPR2Q13873 1038 aa30.56■■■□□ 2.48
CTCF-203ENST00000566078 TXNDC5Q8NBS9 432 aaKnown RBP30.56■■■□□ 2.48
CTCF-203ENST00000566078 MZB1Q8WU39 189 aa30.56■■■□□ 2.48
CTCF-203ENST00000566078 CA14Q9ULX7 337 aa30.56■■■□□ 2.48
CTCF-203ENST00000566078 FNDC3AQ9Y2H6 1198 aaKnown RBP30.56■■■□□ 2.48
CTCF-203ENST00000566078 KRT37O76014 449 aa30.55■■■□□ 2.48
CTCF-203ENST00000566078 KRT38O76015 456 aa30.55■■■□□ 2.48
CTCF-203ENST00000566078 MRPS21P82921 87 aaKnown RBP30.55■■■□□ 2.48
CTCF-203ENST00000566078 MPP1Q00013 466 aa30.55■■■□□ 2.48
CTCF-203ENST00000566078 STARD3Q14849 445 aa30.55■■■□□ 2.48
CTCF-203ENST00000566078 GRTP1Q5TC63 336 aa30.55■■■□□ 2.48
CTCF-203ENST00000566078 LGSNQ5TDP6 509 aa30.55■■■□□ 2.48
CTCF-203ENST00000566078 OR4L1Q8NH43 312 aa30.55■■■□□ 2.48
CTCF-203ENST00000566078 PBXIP1Q96AQ6 731 aa30.55■■■□□ 2.48
CTCF-203ENST00000566078 RBBP8Q99708 897 aa30.55■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms