RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 MRPL40Q9NQ50 206 aaKnown RBP20.75■□□□□ 0.91
CLN3-219ENST00000565778 AMACRQ9UHK6 382 aa20.75■□□□□ 0.91
CLN3-219ENST00000565778 PPIL1Q9Y3C6 166 aa20.75■□□□□ 0.91
CLN3-219ENST00000565778 PCDHB1Q9Y5F3 818 aa20.75■□□□□ 0.91
CLN3-219ENST00000565778 HEY1Q9Y5J3 304 aa20.75■□□□□ 0.91
CLN3-219ENST00000565778 DGKBQ9Y6T7 804 aa20.75■□□□□ 0.91
CLN3-219ENST00000565778 GOLGA6CA6NDK9 693 aa20.74■□□□□ 0.91
CLN3-219ENST00000565778 GOLGA6BA6NDN3 693 aa20.74■□□□□ 0.91
CLN3-219ENST00000565778 TNFRSF10CO14798 259 aa20.74■□□□□ 0.91
CLN3-219ENST00000565778 GOLGA6DP0CG33 693 aa20.74■□□□□ 0.91
CLN3-219ENST00000565778 TNNT1P13805 278 aa20.74■□□□□ 0.91
CLN3-219ENST00000565778 LHCGRP22888 699 aa20.74■□□□□ 0.91
CLN3-219ENST00000565778 COL28A1Q2UY09 1125 aa20.74■□□□□ 0.91
CLN3-219ENST00000565778 LRRK1Q38SD2 2015 aa20.74■□□□□ 0.91
CLN3-219ENST00000565778 KCTD16Q68DU8 428 aa20.74■□□□□ 0.91
CLN3-219ENST00000565778 Q6ZVL8 140 aa20.74■□□□□ 0.91
CLN3-219ENST00000565778 TAF8Q7Z7C8 310 aa20.74■□□□□ 0.91
CLN3-219ENST00000565778 TSPAN33Q86UF1 283 aa20.74■□□□□ 0.91
CLN3-219ENST00000565778 CCDC13Q8IYE1 715 aa20.74■□□□□ 0.91
CLN3-219ENST00000565778 PELI3Q8N2H9 469 aa20.74■□□□□ 0.91
CLN3-219ENST00000565778 FATE1Q969F0 183 aa20.74■□□□□ 0.91
CLN3-219ENST00000565778 RBM15Q96T37 977 aaKnown RBP eCLIP20.74■□□□□ 0.91
CLN3-219ENST00000565778 CYP4F12Q9HCS2 524 aa20.74■□□□□ 0.91
CLN3-219ENST00000565778 FGF22Q9HCT0 170 aa20.74■□□□□ 0.91
CLN3-219ENST00000565778 PHPT1Q9NRX4 125 aaPredicted RBP20.74■□□□□ 0.91
CLN3-219ENST00000565778 GOLGA6AQ9NYA3 693 aa20.74■□□□□ 0.91
CLN3-219ENST00000565778 DTLQ9NZJ0 730 aa20.74■□□□□ 0.91
CLN3-219ENST00000565778 INTUQ9ULD6 942 aa20.74■□□□□ 0.91
CLN3-219ENST00000565778 CHKBQ9Y259 395 aa20.74■□□□□ 0.91
CLN3-219ENST00000565778 ANKRD36A6QL64 1941 aa20.74■□□□□ 0.91
CLN3-219ENST00000565778 A0A0U1RQS6 177 aa20.73■□□□□ 0.91
CLN3-219ENST00000565778 PSMD11O00231 422 aa20.73■□□□□ 0.91
CLN3-219ENST00000565778 FZD6O60353 706 aa20.73■□□□□ 0.91
CLN3-219ENST00000565778 USP12O75317 370 aa20.73■□□□□ 0.91
CLN3-219ENST00000565778 MTA2O94776 668 aa20.73■□□□□ 0.91
CLN3-219ENST00000565778 JCHAINP01591 159 aa20.73■□□□□ 0.91
CLN3-219ENST00000565778 ARL10Q8N8L6 244 aa20.73■□□□□ 0.91
CLN3-219ENST00000565778 FAM46DQ8NEK8 389 aa20.73■□□□□ 0.91
CLN3-219ENST00000565778 RNF25Q96BH1 459 aaPredicted RBP20.73■□□□□ 0.91
CLN3-219ENST00000565778 HDAC11Q96DB2 347 aa20.73■□□□□ 0.91
CLN3-219ENST00000565778 DTD2Q96FN9 168 aa20.73■□□□□ 0.91
CLN3-219ENST00000565778 MCCC1Q96RQ3 725 aaPredicted RBP20.73■□□□□ 0.91
CLN3-219ENST00000565778 CCDC3Q9BQI4 270 aa20.73■□□□□ 0.91
CLN3-219ENST00000565778 BRINP1O60477 761 aa20.72■□□□□ 0.91
CLN3-219ENST00000565778 CA4P22748 312 aa20.72■□□□□ 0.91
CLN3-219ENST00000565778 ACTN2P35609 894 aa20.72■□□□□ 0.91
CLN3-219ENST00000565778 SLC1A1P43005 524 aa20.72■□□□□ 0.91
CLN3-219ENST00000565778 NOP2P46087 812 aaKnown RBP20.72■□□□□ 0.91
CLN3-219ENST00000565778 NIPAL4Q0D2K0 466 aa20.72■□□□□ 0.91
CLN3-219ENST00000565778 ISXQ2M1V0 245 aa20.72■□□□□ 0.91
CLN3-219ENST00000565778 SARM1Q6SZW1 724 aa20.72■□□□□ 0.91
CLN3-219ENST00000565778 HEATR4Q86WZ0 1026 aa20.72■□□□□ 0.91
CLN3-219ENST00000565778 FGF11Q92914 225 aa20.72■□□□□ 0.91
CLN3-219ENST00000565778 SMIM14Q96QK8 99 aa20.72■□□□□ 0.91
CLN3-219ENST00000565778 LGMNQ99538 433 aa20.72■□□□□ 0.91
CLN3-219ENST00000565778 TEX101Q9BY14 249 aa20.72■□□□□ 0.91
CLN3-219ENST00000565778 TMEM168Q9H0V1 697 aa20.72■□□□□ 0.91
CLN3-219ENST00000565778 SUDS3Q9H7L9 328 aaPredicted RBP20.72■□□□□ 0.91
CLN3-219ENST00000565778 SYNDIG1Q9H7V2 258 aa20.72■□□□□ 0.91
CLN3-219ENST00000565778 HYOU1Q9Y4L1 999 aa20.72■□□□□ 0.91
CLN3-219ENST00000565778 ZFHX4Q86UP3 3567 aa20.72■□□□□ 0.91
CLN3-219ENST00000565778 SHROOM3Q8TF72 1996 aa20.72■□□□□ 0.91
CLN3-219ENST00000565778 MYLKQ15746 1914 aa20.71■□□□□ 0.91
CLN3-219ENST00000565778 A0A087WV48 116 aa20.71■□□□□ 0.91
CLN3-219ENST00000565778 PRSS38A1L453 326 aa20.71■□□□□ 0.91
CLN3-219ENST00000565778 C3orf70A6NLC5 250 aaPredicted RBP20.71■□□□□ 0.91
CLN3-219ENST00000565778 KCNK1O00180 336 aa20.71■□□□□ 0.91
CLN3-219ENST00000565778 APOL1O14791 398 aa20.71■□□□□ 0.91
CLN3-219ENST00000565778 RRP8O43159 456 aaKnown RBP20.71■□□□□ 0.91
CLN3-219ENST00000565778 TLX3O43711 291 aaPredicted RBP20.71■□□□□ 0.91
CLN3-219ENST00000565778 KRT1P04264 644 aa20.71■□□□□ 0.91
CLN3-219ENST00000565778 MPOP05164 745 aa20.71■□□□□ 0.91
CLN3-219ENST00000565778 HLA-DQB2P05538 268 aa20.71■□□□□ 0.91
CLN3-219ENST00000565778 MYCLP1P12525 358 aaPredicted RBP20.71■□□□□ 0.91
CLN3-219ENST00000565778 ZFXP17010 805 aaPredicted RBP20.71■□□□□ 0.91
CLN3-219ENST00000565778 MAGEA1P43355 309 aa20.71■□□□□ 0.91
CLN3-219ENST00000565778 PTSQ03393 145 aa20.71■□□□□ 0.91
CLN3-219ENST00000565778 AP1B1Q10567 949 aa20.71■□□□□ 0.91
CLN3-219ENST00000565778 IHHQ14623 411 aa20.71■□□□□ 0.91
CLN3-219ENST00000565778 LRRC38Q5VT99 294 aa20.71■□□□□ 0.91
CLN3-219ENST00000565778 ALG1LQ6GMV1 187 aa20.71■□□□□ 0.91
CLN3-219ENST00000565778 RAET1GQ6H3X3 334 aa20.71■□□□□ 0.91
CLN3-219ENST00000565778 LRRC69Q6ZNQ3 347 aa20.71■□□□□ 0.91
CLN3-219ENST00000565778 RBM44Q6ZP01 1051 aaKnown RBP20.71■□□□□ 0.91
CLN3-219ENST00000565778 TECPR1Q7Z6L1 1165 aa20.71■□□□□ 0.91
CLN3-219ENST00000565778 RFX6Q8HWS3 928 aa20.71■□□□□ 0.91
CLN3-219ENST00000565778 RHOT1Q8IXI2 618 aa20.71■□□□□ 0.91
CLN3-219ENST00000565778 PLD5Q8N7P1 536 aa20.71■□□□□ 0.91
CLN3-219ENST00000565778 KYQ8NBH2 561 aa20.71■□□□□ 0.91
CLN3-219ENST00000565778 ARRDC2Q8TBH0 407 aa20.71■□□□□ 0.91
CLN3-219ENST00000565778 DPEP2Q9H4A9 486 aa20.71■□□□□ 0.91
CLN3-219ENST00000565778 PCDH9Q9HC56 1237 aa20.71■□□□□ 0.91
CLN3-219ENST00000565778 DDX56Q9NY93 547 aaKnown RBP20.71■□□□□ 0.91
CLN3-219ENST00000565778 CD84Q9UIB8 345 aa20.71■□□□□ 0.91
CLN3-219ENST00000565778 A0A0J9YYE9 177 aa20.7■□□□□ 0.9
CLN3-219ENST00000565778 ZNF487B1APH4 448 aa20.7■□□□□ 0.9
CLN3-219ENST00000565778 SPOPO43791 374 aa20.7■□□□□ 0.9
CLN3-219ENST00000565778 TRBC1P01850 177 aa20.7■□□□□ 0.9
CLN3-219ENST00000565778 COMTP21964 271 aa20.7■□□□□ 0.9
CLN3-219ENST00000565778 EIF2S3P41091 472 aaKnown RBP20.7■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms