RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 RAI2Q9Y5P3 530 aa22.5■■□□□ 1.19
CLN3-215ENST00000565236 LRP4O75096 1905 aa22.49■■□□□ 1.19
CLN3-215ENST00000565236 SSU72P8A0A1W2PR75 194 aa22.49■■□□□ 1.19
CLN3-215ENST00000565236 MATN3O15232 486 aa22.49■■□□□ 1.19
CLN3-215ENST00000565236 ASTE1Q2TB18 679 aaPredicted RBP22.49■■□□□ 1.19
CLN3-215ENST00000565236 USP45Q70EL2 814 aa22.49■■□□□ 1.19
CLN3-215ENST00000565236 PELI3Q8N2H9 469 aa22.49■■□□□ 1.19
CLN3-215ENST00000565236 CBARPQ8N350 705 aaPredicted RBP22.49■■□□□ 1.19
CLN3-215ENST00000565236 ATXN7L3BQ96GX2 97 aa22.49■■□□□ 1.19
CLN3-215ENST00000565236 SYNDIG1Q9H7V2 258 aa22.49■■□□□ 1.19
CLN3-215ENST00000565236 PHPT1Q9NRX4 125 aaPredicted RBP22.49■■□□□ 1.19
CLN3-215ENST00000565236 HAUS2Q9NVX0 235 aa22.49■■□□□ 1.19
CLN3-215ENST00000565236 IGSF10Q6WRI0 2623 aa22.48■■□□□ 1.19
CLN3-215ENST00000565236 PSMD11O00231 422 aa22.48■■□□□ 1.19
CLN3-215ENST00000565236 MAP3K6O95382 1288 aa22.48■■□□□ 1.19
CLN3-215ENST00000565236 TMEM253P0C7T8 217 aa22.48■■□□□ 1.19
CLN3-215ENST00000565236 CTPS1P17812 591 aa22.48■■□□□ 1.19
CLN3-215ENST00000565236 CES1P23141 567 aa22.48■■□□□ 1.19
CLN3-215ENST00000565236 CCNCP24863 283 aa22.48■■□□□ 1.19
CLN3-215ENST00000565236 ETV3P41162 512 aa22.48■■□□□ 1.19
CLN3-215ENST00000565236 CCDC173Q0VFZ6 552 aa22.48■■□□□ 1.19
CLN3-215ENST00000565236 SPIDRQ14159 915 aa22.48■■□□□ 1.19
CLN3-215ENST00000565236 HSD11B1LQ7Z5J1 315 aa22.48■■□□□ 1.19
CLN3-215ENST00000565236 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP22.48■■□□□ 1.19
CLN3-215ENST00000565236 FAM46DQ8NEK8 389 aa22.48■■□□□ 1.19
CLN3-215ENST00000565236 OR6C4Q8NGE1 309 aa22.48■■□□□ 1.19
CLN3-215ENST00000565236 DTD2Q96FN9 168 aa22.48■■□□□ 1.19
CLN3-215ENST00000565236 CRELD1Q96HD1 420 aa22.48■■□□□ 1.19
CLN3-215ENST00000565236 TSGA13Q96PP4 275 aa22.48■■□□□ 1.19
CLN3-215ENST00000565236 MCCC1Q96RQ3 725 aaPredicted RBP22.48■■□□□ 1.19
CLN3-215ENST00000565236 TSPY26PQ9H489 355 aa22.48■■□□□ 1.19
CLN3-215ENST00000565236 RBM22Q9NW64 420 aaKnown RBP eCLIP22.48■■□□□ 1.19
CLN3-215ENST00000565236 PPIL1Q9Y3C6 166 aa22.48■■□□□ 1.19
CLN3-215ENST00000565236 ENTPD2Q9Y5L3 495 aa22.48■■□□□ 1.19
CLN3-215ENST00000565236 NPIPB15A6NHN6 443 aaPredicted RBP22.47■■□□□ 1.19
CLN3-215ENST00000565236 DXOO77932 396 aaKnown RBP22.47■■□□□ 1.19
CLN3-215ENST00000565236 PDHA1P08559 390 aa22.47■■□□□ 1.19
CLN3-215ENST00000565236 MYCLP1P12525 358 aaPredicted RBP22.47■■□□□ 1.19
CLN3-215ENST00000565236 HOXB3P14651 431 aaPredicted RBP22.47■■□□□ 1.19
CLN3-215ENST00000565236 LHCGRP22888 699 aa22.47■■□□□ 1.19
CLN3-215ENST00000565236 MAN1A1P33908 653 aa22.47■■□□□ 1.19
CLN3-215ENST00000565236 MESDQ14696 234 aa22.47■■□□□ 1.19
CLN3-215ENST00000565236 PTPRRQ15256 657 aa22.47■■□□□ 1.19
CLN3-215ENST00000565236 C3orf38Q5JPI3 329 aa22.47■■□□□ 1.19
CLN3-215ENST00000565236 Q6ZVL8 140 aa22.47■■□□□ 1.19
CLN3-215ENST00000565236 VSTM4Q8IW00 320 aa22.47■■□□□ 1.19
CLN3-215ENST00000565236 PIH1D2Q8WWB5 315 aa22.47■■□□□ 1.19
CLN3-215ENST00000565236 MAML1Q92585 1016 aa22.47■■□□□ 1.19
CLN3-215ENST00000565236 FATE1Q969F0 183 aa22.47■■□□□ 1.19
CLN3-215ENST00000565236 CCDC74AQ96AQ1 378 aa22.47■■□□□ 1.19
CLN3-215ENST00000565236 TMEM168Q9H0V1 697 aa22.47■■□□□ 1.19
CLN3-215ENST00000565236 AMACRQ9UHK6 382 aa22.47■■□□□ 1.19
CLN3-215ENST00000565236 SATB2Q9UPW6 733 aa22.47■■□□□ 1.19
CLN3-215ENST00000565236 TTLL3Q9Y4R7 772 aa22.47■■□□□ 1.19
CLN3-215ENST00000565236 PRSS38A1L453 326 aa22.46■■□□□ 1.19
CLN3-215ENST00000565236 GOLGA6CA6NDK9 693 aa22.46■■□□□ 1.19
CLN3-215ENST00000565236 GOLGA6BA6NDN3 693 aa22.46■■□□□ 1.19
CLN3-215ENST00000565236 GOLGA6DP0CG33 693 aa22.46■■□□□ 1.19
CLN3-215ENST00000565236 CCNB1P14635 433 aa22.46■■□□□ 1.19
CLN3-215ENST00000565236 MX2P20592 715 aa22.46■■□□□ 1.19
CLN3-215ENST00000565236 KDELR1P24390 212 aa22.46■■□□□ 1.19
CLN3-215ENST00000565236 RBMS1P29558 406 aaKnown RBP22.46■■□□□ 1.19
CLN3-215ENST00000565236 EPHB1P54762 984 aa22.46■■□□□ 1.19
CLN3-215ENST00000565236 PCBP4P57723 403 aaKnown RBP22.46■■□□□ 1.19
CLN3-215ENST00000565236 ERVPABLB-1P60509 514 aa22.46■■□□□ 1.19
CLN3-215ENST00000565236 TSPAN33Q86UF1 283 aa22.46■■□□□ 1.19
CLN3-215ENST00000565236 HEATR4Q86WZ0 1026 aa22.46■■□□□ 1.19
CLN3-215ENST00000565236 CCNYQ8ND76 341 aa22.46■■□□□ 1.19
CLN3-215ENST00000565236 ZNF248Q8NDW4 579 aa22.46■■□□□ 1.19
CLN3-215ENST00000565236 GPR156Q8NFN8 814 aa22.46■■□□□ 1.19
CLN3-215ENST00000565236 SLC35G2Q8TBE7 412 aa22.46■■□□□ 1.19
CLN3-215ENST00000565236 FAF2Q96CS3 445 aa22.46■■□□□ 1.19
CLN3-215ENST00000565236 CCDC42Q96M95 316 aa22.46■■□□□ 1.19
CLN3-215ENST00000565236 LGMNQ99538 433 aa22.46■■□□□ 1.19
CLN3-215ENST00000565236 CHP1Q99653 195 aa22.46■■□□□ 1.19
CLN3-215ENST00000565236 TEX101Q9BY14 249 aa22.46■■□□□ 1.19
CLN3-215ENST00000565236 DPEP2Q9H4A9 486 aa22.46■■□□□ 1.19
CLN3-215ENST00000565236 ABHD10Q9NUJ1 306 aa22.46■■□□□ 1.19
CLN3-215ENST00000565236 GOLGA6AQ9NYA3 693 aa22.46■■□□□ 1.19
CLN3-215ENST00000565236 CASC3O15234 703 aaKnown RBP22.45■■□□□ 1.18
CLN3-215ENST00000565236 DSC2Q02487 901 aa22.45■■□□□ 1.18
CLN3-215ENST00000565236 GBE1Q04446 702 aa22.45■■□□□ 1.18
CLN3-215ENST00000565236 ALG1LQ6GMV1 187 aa22.45■■□□□ 1.18
CLN3-215ENST00000565236 RAET1GQ6H3X3 334 aa22.45■■□□□ 1.18
CLN3-215ENST00000565236 OGFOD3Q6PK18 319 aa22.45■■□□□ 1.18
CLN3-215ENST00000565236 PQLC3Q8N755 202 aa22.45■■□□□ 1.18
CLN3-215ENST00000565236 RAPGEF5Q92565 580 aa22.45■■□□□ 1.18
CLN3-215ENST00000565236 GFM1Q96RP9 751 aaKnown RBP22.45■■□□□ 1.18
CLN3-215ENST00000565236 CARS2Q9HA77 564 aaKnown RBP22.45■■□□□ 1.18
CLN3-215ENST00000565236 THSD1Q9NS62 852 aa22.45■■□□□ 1.18
CLN3-215ENST00000565236 RABGEF1Q9UJ41 708 aa22.45■■□□□ 1.18
CLN3-215ENST00000565236 ATRXP46100 2492 aa22.45■■□□□ 1.18
CLN3-215ENST00000565236 LOC400499M0QZD8 3231 aa22.44■■□□□ 1.18
CLN3-215ENST00000565236 NTN3O00634 580 aaPredicted RBP22.44■■□□□ 1.18
CLN3-215ENST00000565236 FZD6O60353 706 aa22.44■■□□□ 1.18
CLN3-215ENST00000565236 CA4P22748 312 aa22.44■■□□□ 1.18
CLN3-215ENST00000565236 CCL7P80098 99 aa22.44■■□□□ 1.18
CLN3-215ENST00000565236 SLC10A2Q12908 348 aaPredicted RBP22.44■■□□□ 1.18
CLN3-215ENST00000565236 FOXR1Q6PIV2 292 aa22.44■■□□□ 1.18
CLN3-215ENST00000565236 TECPR1Q7Z6L1 1165 aa22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms