RNA–Protein interactions for RNA: ENST00000563854.1

NME3-205, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 5

Gene NME3, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-205ENST00000563854 LGMNQ99538 433 aa17.7■□□□□ 0.42
NME3-205ENST00000563854 ZNF670Q9BS34 389 aa17.7■□□□□ 0.42
NME3-205ENST00000563854 POLR1EQ9GZS1 481 aaKnown RBP17.7■□□□□ 0.42
NME3-205ENST00000563854 POLR1BQ9H9Y6 1135 aa17.7■□□□□ 0.42
NME3-205ENST00000563854 SPTLC3Q9NUV7 552 aa17.7■□□□□ 0.42
NME3-205ENST00000563854 SATB2Q9UPW6 733 aa17.7■□□□□ 0.42
NME3-205ENST00000563854 RAI2Q9Y5P3 530 aa17.7■□□□□ 0.42
NME3-205ENST00000563854 ATRXP46100 2492 aa17.69■□□□□ 0.42
NME3-205ENST00000563854 A0A0U1RQS6 177 aa17.69■□□□□ 0.42
NME3-205ENST00000563854 KRT7P08729 469 aa17.69■□□□□ 0.42
NME3-205ENST00000563854 EPHB1P54762 984 aa17.69■□□□□ 0.42
NME3-205ENST00000563854 DSC2Q02487 901 aa17.69■□□□□ 0.42
NME3-205ENST00000563854 PAFAH1B3Q15102 231 aaKnown RBP17.69■□□□□ 0.42
NME3-205ENST00000563854 PDK2Q15119 407 aa17.69■□□□□ 0.42
NME3-205ENST00000563854 RALGPS1Q5JS13 557 aa17.69■□□□□ 0.42
NME3-205ENST00000563854 RAET1GQ6H3X3 334 aa17.69■□□□□ 0.42
NME3-205ENST00000563854 TIGD7Q6NT04 549 aaPredicted RBP17.69■□□□□ 0.42
NME3-205ENST00000563854 LVRNQ6Q4G3 990 aa17.69■□□□□ 0.42
NME3-205ENST00000563854 HEATR4Q86WZ0 1026 aa17.69■□□□□ 0.42
NME3-205ENST00000563854 LRRC49Q8IUZ0 686 aa17.69■□□□□ 0.42
NME3-205ENST00000563854 FAM46DQ8NEK8 389 aa17.69■□□□□ 0.42
NME3-205ENST00000563854 FAM71BQ8TC56 605 aa17.69■□□□□ 0.42
NME3-205ENST00000563854 SMIM14Q96QK8 99 aa17.69■□□□□ 0.42
NME3-205ENST00000563854 DNAJC7Q99615 494 aa17.69■□□□□ 0.42
NME3-205ENST00000563854 TMEM168Q9H0V1 697 aa17.69■□□□□ 0.42
NME3-205ENST00000563854 PHPT1Q9NRX4 125 aaPredicted RBP17.69■□□□□ 0.42
NME3-205ENST00000563854 RBM22Q9NW64 420 aaKnown RBP eCLIP17.69■□□□□ 0.42
NME3-205ENST00000563854 RABGEF1Q9UJ41 708 aa17.69■□□□□ 0.42
NME3-205ENST00000563854 ENTPD2Q9Y5L3 495 aa17.69■□□□□ 0.42
NME3-205ENST00000563854 DGKBQ9Y6T7 804 aa17.69■□□□□ 0.42
NME3-205ENST00000563854 PRSS38A1L453 326 aa17.68■□□□□ 0.42
NME3-205ENST00000563854 PDHA1P08559 390 aa17.68■□□□□ 0.42
NME3-205ENST00000563854 TMEM253P0C7T8 217 aa17.68■□□□□ 0.42
NME3-205ENST00000563854 MYCLP1P12525 358 aaPredicted RBP17.68■□□□□ 0.42
NME3-205ENST00000563854 PCBP4P57723 403 aaKnown RBP17.68■□□□□ 0.42
NME3-205ENST00000563854 GBE1Q04446 702 aa17.68■□□□□ 0.42
NME3-205ENST00000563854 IFI16Q16666 785 aaKnown RBP17.68■□□□□ 0.42
NME3-205ENST00000563854 Q6ZVL8 140 aa17.68■□□□□ 0.42
NME3-205ENST00000563854 SDR16C5Q8N3Y7 309 aa17.68■□□□□ 0.42
NME3-205ENST00000563854 TEX26Q8N6G2 289 aa17.68■□□□□ 0.42
NME3-205ENST00000563854 CCNYQ8ND76 341 aa17.68■□□□□ 0.42
NME3-205ENST00000563854 CCL4L1Q8NHW4 92 aa17.68■□□□□ 0.42
NME3-205ENST00000563854 DTD2Q96FN9 168 aa17.68■□□□□ 0.42
NME3-205ENST00000563854 CARS2Q9HA77 564 aaKnown RBP17.68■□□□□ 0.42
NME3-205ENST00000563854 ABHD10Q9NUJ1 306 aa17.68■□□□□ 0.42
NME3-205ENST00000563854 CD84Q9UIB8 345 aa17.68■□□□□ 0.42
NME3-205ENST00000563854 SSU72P8A0A1W2PR75 194 aa17.67■□□□□ 0.42
NME3-205ENST00000563854 LRRD1A4D1F6 860 aa17.67■□□□□ 0.42
NME3-205ENST00000563854 PDE2AO00408 941 aaPredicted RBP17.67■□□□□ 0.42
NME3-205ENST00000563854 MATN3O15232 486 aa17.67■□□□□ 0.42
NME3-205ENST00000563854 MFAP3LO75121 409 aa17.67■□□□□ 0.42
NME3-205ENST00000563854 TCEA3O75764 348 aa17.67■□□□□ 0.42
NME3-205ENST00000563854 RPLP0P05388 317 aaKnown RBP17.67■□□□□ 0.42
NME3-205ENST00000563854 KRT10P13645 584 aa17.67■□□□□ 0.42
NME3-205ENST00000563854 TRIM23P36406 574 aa17.67■□□□□ 0.42
NME3-205ENST00000563854 LSSP48449 732 aa17.67■□□□□ 0.42
NME3-205ENST00000563854 ASTE1Q2TB18 679 aaPredicted RBP17.67■□□□□ 0.42
NME3-205ENST00000563854 DOK6Q6PKX4 331 aa17.67■□□□□ 0.42
NME3-205ENST00000563854 VSTM4Q8IW00 320 aa17.67■□□□□ 0.42
NME3-205ENST00000563854 SFTPA2Q8IWL1 248 aa17.67■□□□□ 0.42
NME3-205ENST00000563854 LSMEM2Q8N112 164 aa17.67■□□□□ 0.42
NME3-205ENST00000563854 NDUFAF2Q8N183 169 aa17.67■□□□□ 0.42
NME3-205ENST00000563854 Q8N9G6 341 aaPredicted RBP17.67■□□□□ 0.42
NME3-205ENST00000563854 WDR48Q8TAF3 677 aa17.67■□□□□ 0.42
NME3-205ENST00000563854 PIH1D2Q8WWB5 315 aa17.67■□□□□ 0.42
NME3-205ENST00000563854 SPOCK2Q92563 424 aa17.67■□□□□ 0.42
NME3-205ENST00000563854 MAML1Q92585 1016 aa17.67■□□□□ 0.42
NME3-205ENST00000563854 SCRN2Q96FV2 425 aa17.67■□□□□ 0.42
NME3-205ENST00000563854 CCDC42Q96M95 316 aa17.67■□□□□ 0.42
NME3-205ENST00000563854 ZNF578Q96N58 590 aaPredicted RBP17.67■□□□□ 0.42
NME3-205ENST00000563854 ZNF830Q96NB3 372 aaPredicted RBP17.67■□□□□ 0.42
NME3-205ENST00000563854 GFM1Q96RP9 751 aaKnown RBP17.67■□□□□ 0.42
NME3-205ENST00000563854 CHP1Q99653 195 aa17.67■□□□□ 0.42
NME3-205ENST00000563854 DPEP2Q9H4A9 486 aa17.67■□□□□ 0.42
NME3-205ENST00000563854 EPB41L5Q9HCM4 733 aa17.67■□□□□ 0.42
NME3-205ENST00000563854 HAUS2Q9NVX0 235 aa17.67■□□□□ 0.42
NME3-205ENST00000563854 LCMT1Q9UIC8 334 aa17.67■□□□□ 0.42
NME3-205ENST00000563854 CHKBQ9Y259 395 aa17.67■□□□□ 0.42
NME3-205ENST00000563854 COL27A1Q8IZC6 1860 aaPredicted RBP17.67■□□□□ 0.42
NME3-205ENST00000563854 PMS2P1A4D2B8 440 aa17.66■□□□□ 0.42
NME3-205ENST00000563854 AGRPO00253 132 aa17.66■□□□□ 0.42
NME3-205ENST00000563854 TNFRSF10CO14798 259 aa17.66■□□□□ 0.42
NME3-205ENST00000563854 HLA-DQB2P05538 268 aa17.66■□□□□ 0.42
NME3-205ENST00000563854 HOXC4P09017 264 aaPredicted RBP17.66■□□□□ 0.42
NME3-205ENST00000563854 TNNT1P13805 278 aa17.66■□□□□ 0.42
NME3-205ENST00000563854 CCNB1P14635 433 aa17.66■□□□□ 0.42
NME3-205ENST00000563854 RBMS1P29558 406 aaKnown RBP17.66■□□□□ 0.42
NME3-205ENST00000563854 MAN1A1P33908 653 aa17.66■□□□□ 0.42
NME3-205ENST00000563854 GNPDA1P46926 289 aa17.66■□□□□ 0.42
NME3-205ENST00000563854 CCL7P80098 99 aa17.66■□□□□ 0.42
NME3-205ENST00000563854 CDK3Q00526 305 aa17.66■□□□□ 0.42
NME3-205ENST00000563854 LRRC66Q68CR7 880 aa17.66■□□□□ 0.42
NME3-205ENST00000563854 RFLNAQ6ZTI6 216 aa17.66■□□□□ 0.42
NME3-205ENST00000563854 SPACA3Q8IXA5 215 aa17.66■□□□□ 0.42
NME3-205ENST00000563854 PQLC3Q8N755 202 aa17.66■□□□□ 0.42
NME3-205ENST00000563854 ZNF248Q8NDW4 579 aa17.66■□□□□ 0.42
NME3-205ENST00000563854 LPCAT1Q8NF37 534 aa17.66■□□□□ 0.42
NME3-205ENST00000563854 SLC35G2Q8TBE7 412 aa17.66■□□□□ 0.42
NME3-205ENST00000563854 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.66■□□□□ 0.42
NME3-205ENST00000563854 RAPGEF5Q92565 580 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms