RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	IL9R	Q01113	521 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	MAP2K1	Q02750	393 aa	Predicted RBP	2.55	□□□□□ -2
SPG11-223	ENST00000560858	TAP2	Q03519	686 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	TCP10	Q12799	353 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	GRIK3	Q13003	919 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	IK	Q13123	557 aa	Predicted RBP	2.55	□□□□□ -2
SPG11-223	ENST00000560858	DMP1	Q13316	513 aa	Predicted RBP	2.55	□□□□□ -2
SPG11-223	ENST00000560858	FHL3	Q13643	280 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	SPARCL1	Q14515	664 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	PSMD6	Q15008	389 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	MORF4L2	Q15014	288 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	TNIP1	Q15025	636 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	E2F5	Q15329	346 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	TMED2	Q15363	201 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	OASL	Q15646	514 aa	Known RBP	2.55	□□□□□ -2
SPG11-223	ENST00000560858	ADRM1	Q16186	407 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	TAZ	Q16635	292 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	KCTD19	Q17RG1	926 aa	Predicted RBP	2.55	□□□□□ -2
SPG11-223	ENST00000560858	CPEB4	Q17RY0	729 aa	Known RBP eCLIP	2.55	□□□□□ -2
SPG11-223	ENST00000560858	SGSM1	Q2NKQ1	1148 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	TKFC	Q3LXA3	575 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	ZACN	Q401N2	412 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	DGKK	Q5KSL6	1271 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	ANKRD20A2	Q5SQ80	823 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	WASHC2D	Q5SRD0	308 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	RNASEH2B	Q5TBB1	312 aa	Known RBP	2.55	□□□□□ -2
SPG11-223	ENST00000560858	ANKRD20A1	Q5TYW2	823 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	LRRC38	Q5VT99	294 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	ANKRD20A3	Q5VUR7	823 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	FKBP1C	Q5VVH2	108 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	IZUMO3	Q5VZ72	239 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	NUGGC	Q68CJ6	796 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	XRRA1	Q6P2D8	792 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	BZW1	Q7L1Q6	419 aa	Known RBP	2.55	□□□□□ -2
SPG11-223	ENST00000560858	OTUD6A	Q7L8S5	288 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	ANKS1B	Q7Z6G8	1248 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	USP37	Q86T82	979 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	TBC1D1	Q86TI0	1168 aa	Predicted RBP	2.55	□□□□□ -2
SPG11-223	ENST00000560858	CCDC25	Q86WR0	208 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	CHSY1	Q86X52	802 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	ERICH1	Q86X53	443 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	APLF	Q8IW19	511 aa	Predicted RBP	2.55	□□□□□ -2
SPG11-223	ENST00000560858	RHOT1	Q8IXI2	618 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	GPD1L	Q8N335	351 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	PPM1K	Q8N3J5	372 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	ALLC	Q8N6M5	410 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	NIPA2	Q8N8Q9	360 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	CCDC89	Q8N998	374 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	ANKRD42	Q8N9B4	389 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	PNLDC1	Q8NA58	520 aa	Known RBP	2.55	□□□□□ -2
SPG11-223	ENST00000560858	ATL2	Q8NHH9	583 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	EXD1	Q8NHP7	514 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	IL31RA	Q8NI17	732 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	PATJ	Q8NI35	1801 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	ACER1	Q8TDN7	264 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	TAS1R2	Q8TE23	839 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	CHURC1	Q8WUH1	139 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	FAM151A	Q8WW52	585 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	DYDC1	Q8WWB3	177 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	C1orf54	Q8WWF1	131 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	PRCC	Q92733	491 aa	Predicted RBP	2.55	□□□□□ -2
SPG11-223	ENST00000560858	EVPL	Q92817	2033 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	KIFAP3	Q92845	792 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	FKBP10	Q96AY3	582 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	REPS1	Q96D71	796 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	ERP27	Q96DN0	273 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	TBC1D31	Q96DN5	1066 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	MASTL	Q96GX5	879 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	RBM41	Q96IZ5	413 aa	Known RBP	2.55	□□□□□ -2
SPG11-223	ENST00000560858	C5orf34	Q96MH7	638 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	CFAP57	Q96MR6	1250 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	C8orf37	Q96NL8	207 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	ACAP3	Q96P50	834 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	ASB2	Q96Q27	587 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	RAB3IP	Q96QF0	476 aa	Predicted RBP	2.55	□□□□□ -2
SPG11-223	ENST00000560858	CGRRF1	Q99675	332 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	WDR83	Q9BRX9	315 aa	Known RBP	2.55	□□□□□ -2
SPG11-223	ENST00000560858	NTPCR	Q9BSD7	190 aa	Known RBP	2.55	□□□□□ -2
SPG11-223	ENST00000560858	TRMO	Q9BU70	441 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	TPSD1	Q9BZJ3	242 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	TRIM7	Q9C029	511 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	TRIM6	Q9C030	488 aa	Predicted RBP	2.55	□□□□□ -2
SPG11-223	ENST00000560858	MAF1	Q9H063	256 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	MYLK2	Q9H1R3	596 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	DBNDD1	Q9H9R9	158 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	PCDH9	Q9HC56	1237 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	AGO4	Q9HCK5	861 aa	Known RBP	2.55	□□□□□ -2
SPG11-223	ENST00000560858	XPNPEP1	Q9NQW7	623 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	TOPORS	Q9NS56	1045 aa	Predicted RBP	2.55	□□□□□ -2
SPG11-223	ENST00000560858	C1orf112	Q9NSG2	853 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	RAB20	Q9NX57	234 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	MKS1	Q9NXB0	559 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	CYP39A1	Q9NYL5	469 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	NKIRAS1	Q9NYS0	192 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	SLC24A2	Q9UI40	661 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	LNPEP	Q9UIQ6	1025 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	FEM1B	Q9UK73	627 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	GRID1	Q9ULK0	1009 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	CORO1C	Q9ULV4	474 aa	Predicted RBP	2.55	□□□□□ -2
SPG11-223	ENST00000560858	TBX20	Q9UMR3	447 aa		2.55	□□□□□ -2

Retrieved 100 of 20,778 RNA–protein pairs in 15 ms