RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 GNSP15586 552 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 MCM3P25205 808 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 IVDP26440 423 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 AKT2P31751 481 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 HMGCLP35914 325 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 HADHAP40939 763 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 RPL21P46778 160 aaKnown RBP9.24□□□□□ -0.93
LDLR-210ENST00000559340 LIG3P49916 1009 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 METAP1P53582 386 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 ITGA8P53708 1063 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 TERF1P54274 439 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 TAS2R38P59533 333 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 SLC7A5Q01650 507 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 GUCY2DQ02846 1103 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 DMWDQ09019 674 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 CUL1Q13616 776 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 SIM2Q14190 667 aaPredicted RBP9.24□□□□□ -0.93
LDLR-210ENST00000559340 AGERQ15109 404 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 SKIDA1Q1XH10 827 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 PCID2Q5JVF3 399 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 TEX35Q5T0J7 233 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 FAM182AQ5T1J6 154 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 LRRC66Q68CR7 880 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 DENND5AQ6IQ26 1287 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 HIBCHQ6NVY1 386 aaPredicted RBP9.24□□□□□ -0.93
LDLR-210ENST00000559340 CRTC1Q6UUV9 634 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 CYP2U1Q7Z449 544 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 GLT6D1Q7Z4J2 308 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 TMC3Q7Z5M5 1100 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 RABEPKQ7Z6M1 372 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 NLRP8Q86W28 1048 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 CCNJLQ8IV13 435 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 NOA1Q8NC60 698 aaKnown RBP9.24□□□□□ -0.93
LDLR-210ENST00000559340 DENND6BQ8NEG7 585 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 GABPB2Q8TAK5 448 aaPredicted RBP9.24□□□□□ -0.93
LDLR-210ENST00000559340 STYXQ8WUJ0 223 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 UBXN4Q92575 508 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 RUBCNQ92622 972 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 PEX13Q92968 403 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 LRRC39Q96DD0 335 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 LOXL4Q96JB6 756 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 ZC3H10Q96K80 434 aaKnown RBP9.24□□□□□ -0.93
LDLR-210ENST00000559340 WRAP53Q9BUR4 548 aaKnown RBP9.24□□□□□ -0.93
LDLR-210ENST00000559340 C1QTNF2Q9BXJ5 285 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 SLC17A9Q9BYT1 436 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 DPH5Q9H2P9 285 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 EPB41L5Q9HCM4 733 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 SERGEFQ9UGK8 458 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 RIMKLBQ9ULI2 386 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 INVSQ9Y283 1065 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 HS3ST3A1Q9Y663 406 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 SCN8AQ9UQD0 1980 aa9.24□□□□□ -0.93
LDLR-210ENST00000559340 IGLON5A6NGN9 336 aa9.23□□□□□ -0.93
LDLR-210ENST00000559340 NPIPB15A6NHN6 443 aaPredicted RBP9.23□□□□□ -0.93
LDLR-210ENST00000559340 A8MX80 341 aa9.23□□□□□ -0.93
LDLR-210ENST00000559340 PRR5-ARHGAP8B1AHC4 643 aa9.23□□□□□ -0.93
LDLR-210ENST00000559340 PRAMEF26H0Y7S4 382 aa9.23□□□□□ -0.93
LDLR-210ENST00000559340 HRO43593 1189 aa9.23□□□□□ -0.93
LDLR-210ENST00000559340 CLDN7O95471 211 aa9.23□□□□□ -0.93
LDLR-210ENST00000559340 PRKCGP05129 697 aa9.23□□□□□ -0.93
LDLR-210ENST00000559340 TUBBP07437 444 aa9.23□□□□□ -0.93
LDLR-210ENST00000559340 C6P13671 934 aa9.23□□□□□ -0.93
LDLR-210ENST00000559340 TPH1P17752 444 aa9.23□□□□□ -0.93
LDLR-210ENST00000559340 PAMP19021 973 aa9.23□□□□□ -0.93
LDLR-210ENST00000559340 HNRNPA2B1P22626 353 aaKnown RBP9.23□□□□□ -0.93
LDLR-210ENST00000559340 CD27P26842 260 aa9.23□□□□□ -0.93
LDLR-210ENST00000559340 CHRNA4P43681 627 aa9.23□□□□□ -0.93
LDLR-210ENST00000559340 DHPSP49366 369 aaPredicted RBP9.23□□□□□ -0.93
LDLR-210ENST00000559340 STC1P52823 247 aa9.23□□□□□ -0.93
LDLR-210ENST00000559340 PLTPP55058 493 aa9.23□□□□□ -0.93
LDLR-210ENST00000559340 SESN2P58004 480 aaPredicted RBP9.23□□□□□ -0.93
LDLR-210ENST00000559340 CREB5Q02930 508 aa9.23□□□□□ -0.93
LDLR-210ENST00000559340 PTSQ03393 145 aa9.23□□□□□ -0.93
LDLR-210ENST00000559340 RALGDSQ12967 914 aa9.23□□□□□ -0.93
LDLR-210ENST00000559340 SEPT6Q14141 434 aa9.23□□□□□ -0.93
LDLR-210ENST00000559340 HLTFQ14527 1009 aaKnown RBP eCLIP9.23□□□□□ -0.93
LDLR-210ENST00000559340 CNGA3Q16281 694 aa9.23□□□□□ -0.93
LDLR-210ENST00000559340 HIF1AQ16665 826 aa9.23□□□□□ -0.93
LDLR-210ENST00000559340 ZNF284Q2VY69 593 aa9.23□□□□□ -0.93
LDLR-210ENST00000559340 LRRC73Q5JTD7 316 aa9.23□□□□□ -0.93
LDLR-210ENST00000559340 DENND2CQ68D51 928 aa9.23□□□□□ -0.93
LDLR-210ENST00000559340 CASC4Q6P4E1 433 aa9.23□□□□□ -0.93
LDLR-210ENST00000559340 CENPUQ71F23 418 aa9.23□□□□□ -0.93
LDLR-210ENST00000559340 ZNF765Q7L2R6 523 aa9.23□□□□□ -0.93
LDLR-210ENST00000559340 ASCL5Q7RTU5 278 aa9.23□□□□□ -0.93
LDLR-210ENST00000559340 RGL4Q8IZJ4 473 aa9.23□□□□□ -0.93
LDLR-210ENST00000559340 CBARPQ8N350 705 aaPredicted RBP9.23□□□□□ -0.93
LDLR-210ENST00000559340 GPR161Q8N6U8 529 aaKnown RBP9.23□□□□□ -0.93
LDLR-210ENST00000559340 DTX3LQ8TDB6 740 aa9.23□□□□□ -0.93
LDLR-210ENST00000559340 SEC14L1Q92503 715 aa9.23□□□□□ -0.93
LDLR-210ENST00000559340 LENG8Q96PV6 779 aaPredicted RBP9.23□□□□□ -0.93
LDLR-210ENST00000559340 PHACTR1Q9C0D0 580 aa9.23□□□□□ -0.93
LDLR-210ENST00000559340 FAM83DQ9H4H8 585 aa9.23□□□□□ -0.93
LDLR-210ENST00000559340 C6orf106Q9H6K1 298 aaPredicted RBP9.23□□□□□ -0.93
LDLR-210ENST00000559340 MRM3Q9HC36 420 aaKnown RBP9.23□□□□□ -0.93
LDLR-210ENST00000559340 SUSD2Q9UGT4 822 aa9.23□□□□□ -0.93
LDLR-210ENST00000559340 MBD1Q9UIS9 605 aaPredicted RBP9.23□□□□□ -0.93
LDLR-210ENST00000559340 APPL1Q9UKG1 709 aa9.23□□□□□ -0.93
LDLR-210ENST00000559340 TNRC6BQ9UPQ9 1833 aaKnown RBP9.23□□□□□ -0.93
LDLR-210ENST00000559340 ZNF106Q9H2Y7 1883 aaKnown RBP9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms