RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 WDR26Q9H7D7 661 aa8.69□□□□□ -1.02
USP3-208ENST00000558285 EBF2Q9HAK2 575 aa8.69□□□□□ -1.02
USP3-208ENST00000558285 NOD2Q9HC29 1040 aa8.69□□□□□ -1.02
USP3-208ENST00000558285 FZD3Q9NPG1 666 aa8.69□□□□□ -1.02
USP3-208ENST00000558285 DTLQ9NZJ0 730 aa8.69□□□□□ -1.02
USP3-208ENST00000558285 KLQ9UEF7 1012 aa8.69□□□□□ -1.02
USP3-208ENST00000558285 TRHDEQ9UKU6 1024 aa8.69□□□□□ -1.02
USP3-208ENST00000558285 AMFRQ9UKV5 643 aa8.69□□□□□ -1.02
USP3-208ENST00000558285 SPTBN4Q9H254 2564 aa8.69□□□□□ -1.02
USP3-208ENST00000558285 PCDH15Q96QU1 1955 aa8.69□□□□□ -1.02
USP3-208ENST00000558285 SOWAHDA6NJG2 315 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 MAP2K7O14733 419 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 TNFRSF10CO14798 259 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 CBFA2T3O75081 653 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 TNFP01375 233 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 CSF2P04141 144 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 HOXC4P09017 264 aaPredicted RBP8.68□□□□□ -1.02
USP3-208ENST00000558285 CD48P09326 243 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 CR2P20023 1033 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 TEAD1P28347 426 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 CLDN2P57739 230 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 PFN3P60673 137 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 IL9RQ01113 521 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 XRCC4Q13426 336 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 BIRC2Q13490 618 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 PRPSAP1Q14558 356 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 NFATC4Q14934 902 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 ZDHHC20Q5W0Z9 365 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 ALG1LQ6GMV1 187 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 ZCCHC8Q6NZY4 707 aaKnown RBP8.68□□□□□ -1.02
USP3-208ENST00000558285 LAYNQ6UX15 382 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 SPOCD1Q6ZMY3 1216 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 ARHGAP36Q6ZRI8 547 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 NT5DC3Q86UY8 548 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 CDKL3Q8IVW4 592 aaPredicted RBP8.68□□□□□ -1.02
USP3-208ENST00000558285 NRSN1Q8IZ57 195 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 OR4C6Q8NH72 309 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 ABCG4Q9H172 646 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 ETNK2Q9NVF9 386 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 PKD2L2Q9NZM6 624 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 SEPT10Q9P0V9 454 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.68□□□□□ -1.02
USP3-208ENST00000558285 APOBEC3BQ9UH17 382 aaKnown RBP8.68□□□□□ -1.02
USP3-208ENST00000558285 ITM2BQ9Y287 266 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 PCDHGC4Q9Y5F7 938 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 CCDC189A1A4V9 331 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 TRAFD1O14545 582 aaPredicted RBP8.68□□□□□ -1.02
USP3-208ENST00000558285 SCAMP1O15126 338 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 ARHGAP6O43182 974 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 AQP9O43315 295 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 CST8O60676 142 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 PIAS2O75928 621 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 RECQL5O94762 991 aaPredicted RBP8.68□□□□□ -1.02
USP3-208ENST00000558285 JCHAINP01591 159 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 PCCBP05166 539 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 GP1BAP07359 652 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 CTNNA1P35221 906 aaKnown RBP8.68□□□□□ -1.02
USP3-208ENST00000558285 KIAA1024LP59773 190 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 DYNLT1P63172 113 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 IRX1P78414 480 aaPredicted RBP8.68□□□□□ -1.02
USP3-208ENST00000558285 GBE1Q04446 702 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 TUBB2AQ13885 445 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 IRF4Q15306 451 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 C11orf91Q3C1V1 193 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 ATP13A4Q4VNC1 1196 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 DNAJC21Q5F1R6 531 aaKnown RBP8.68□□□□□ -1.02
USP3-208ENST00000558285 LIPIQ6XZB0 460 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 ZNF765Q7L2R6 523 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 TMPRSS12Q86WS5 348 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 SPATS2Q86XZ4 545 aaKnown RBP8.68□□□□□ -1.02
USP3-208ENST00000558285 GATAD2AQ86YP4 633 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 PHACTR4Q8IZ21 702 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 PQLC3Q8N755 202 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 PLD5Q8N7P1 536 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 GRAMD1AQ96CP6 724 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 BMFQ96LC9 184 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 APOOQ9BUR5 198 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 TUBB2BQ9BVA1 445 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 PCDH9Q9HC56 1237 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 KLHL8Q9P2G9 620 aaPredicted RBP8.68□□□□□ -1.02
USP3-208ENST00000558285 SALL4Q9UJQ4 1053 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 MSRB2Q9Y3D2 182 aa8.68□□□□□ -1.02
USP3-208ENST00000558285 CHD5Q8TDI0 1954 aa8.67□□□□□ -1.02
USP3-208ENST00000558285 MACROD2A1Z1Q3 448 aa8.67□□□□□ -1.02
USP3-208ENST00000558285 GOLGA8CPA6NN73 597 aa8.67□□□□□ -1.02
USP3-208ENST00000558285 APOC4-APOC2K7ER74 178 aa8.67□□□□□ -1.02
USP3-208ENST00000558285 KCNK3O14649 394 aa8.67□□□□□ -1.02
USP3-208ENST00000558285 GIPC1O14908 333 aa8.67□□□□□ -1.02
USP3-208ENST00000558285 PJA2O43164 708 aa8.67□□□□□ -1.02
USP3-208ENST00000558285 ERLIN1O75477 346 aa8.67□□□□□ -1.02
USP3-208ENST00000558285 ANXA9O76027 345 aa8.67□□□□□ -1.02
USP3-208ENST00000558285 HEXIM1O94992 359 aaKnown RBP8.67□□□□□ -1.02
USP3-208ENST00000558285 APOC2P02655 101 aa8.67□□□□□ -1.02
USP3-208ENST00000558285 CCDC175P0C221 793 aa8.67□□□□□ -1.02
USP3-208ENST00000558285 MYCLP1P12525 358 aaPredicted RBP8.67□□□□□ -1.02
USP3-208ENST00000558285 DGKAP23743 735 aa8.67□□□□□ -1.02
USP3-208ENST00000558285 CDKN2BP42772 138 aa8.67□□□□□ -1.02
USP3-208ENST00000558285 MAXP61244 160 aa8.67□□□□□ -1.02
USP3-208ENST00000558285 FZD2Q14332 565 aa8.67□□□□□ -1.02
USP3-208ENST00000558285 INPP5AQ14642 412 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms