RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 MAXP61244 160 aa14.65□□□□□ -0.06
SHMT2-235ENST00000557740 CCL7P80098 99 aa14.65□□□□□ -0.06
SHMT2-235ENST00000557740 TRAF2Q12933 501 aa14.65□□□□□ -0.06
SHMT2-235ENST00000557740 EIF3IQ13347 325 aaKnown RBP14.65□□□□□ -0.06
SHMT2-235ENST00000557740 ARHGEF7Q14155 803 aa14.65□□□□□ -0.06
SHMT2-235ENST00000557740 HADHQ16836 314 aaKnown RBP14.65□□□□□ -0.06
SHMT2-235ENST00000557740 USP45Q70EL2 814 aa14.65□□□□□ -0.06
SHMT2-235ENST00000557740 HEATR4Q86WZ0 1026 aa14.65□□□□□ -0.06
SHMT2-235ENST00000557740 CCNJLQ8IV13 435 aa14.65□□□□□ -0.06
SHMT2-235ENST00000557740 PGBD5Q8N414 524 aa14.65□□□□□ -0.06
SHMT2-235ENST00000557740 Q8N9G6 341 aaPredicted RBP14.65□□□□□ -0.06
SHMT2-235ENST00000557740 LSM14AQ8ND56 463 aaKnown RBP14.65□□□□□ -0.06
SHMT2-235ENST00000557740 GPR156Q8NFN8 814 aa14.65□□□□□ -0.06
SHMT2-235ENST00000557740 CPLX3Q8WVH0 158 aa14.65□□□□□ -0.06
SHMT2-235ENST00000557740 TMEM74Q96NL1 305 aa14.65□□□□□ -0.06
SHMT2-235ENST00000557740 LGR4Q9BXB1 951 aa14.65□□□□□ -0.06
SHMT2-235ENST00000557740 TMEM168Q9H0V1 697 aa14.65□□□□□ -0.06
SHMT2-235ENST00000557740 LRRN3Q9H3W5 708 aa14.65□□□□□ -0.06
SHMT2-235ENST00000557740 DPEP2Q9H4A9 486 aa14.65□□□□□ -0.06
SHMT2-235ENST00000557740 CPNE5Q9HCH3 593 aa14.65□□□□□ -0.06
SHMT2-235ENST00000557740 GOLGA6AQ9NYA3 693 aa14.65□□□□□ -0.06
SHMT2-235ENST00000557740 RCOR3Q9P2K3 495 aaPredicted RBP14.65□□□□□ -0.06
SHMT2-235ENST00000557740 PHTF1Q9UMS5 762 aa14.65□□□□□ -0.06
SHMT2-235ENST00000557740 LUC7L2Q9Y383 392 aaKnown RBP14.65□□□□□ -0.06
SHMT2-235ENST00000557740 CDRT15L2A8MXV6 281 aa14.64□□□□□ -0.07
SHMT2-235ENST00000557740 PLD2O14939 933 aa14.64□□□□□ -0.07
SHMT2-235ENST00000557740 PGLSO95336 258 aa14.64□□□□□ -0.07
SHMT2-235ENST00000557740 PRB1P04280 392 aa14.64□□□□□ -0.07
SHMT2-235ENST00000557740 GLB1P16278 677 aa14.64□□□□□ -0.07
SHMT2-235ENST00000557740 PBX1P40424 430 aa14.64□□□□□ -0.07
SHMT2-235ENST00000557740 ETV3P41162 512 aa14.64□□□□□ -0.07
SHMT2-235ENST00000557740 INHBCP55103 352 aa14.64□□□□□ -0.07
SHMT2-235ENST00000557740 C19orf57Q0VDD7 668 aa14.64□□□□□ -0.07
SHMT2-235ENST00000557740 ILF3Q12906 894 aaKnown RBP eCLIP14.64□□□□□ -0.07
SHMT2-235ENST00000557740 C14orf28Q4W4Y0 310 aa14.64□□□□□ -0.07
SHMT2-235ENST00000557740 CERCAMQ5T4B2 595 aa14.64□□□□□ -0.07
SHMT2-235ENST00000557740 ARMC12Q5T9G4 340 aa14.64□□□□□ -0.07
SHMT2-235ENST00000557740 ARHGAP40Q5TG30 622 aa14.64□□□□□ -0.07
SHMT2-235ENST00000557740 SPECC1LQ69YQ0 1117 aa14.64□□□□□ -0.07
SHMT2-235ENST00000557740 RAET1GQ6H3X3 334 aa14.64□□□□□ -0.07
SHMT2-235ENST00000557740 ALKBH5Q6P6C2 394 aaKnown RBP14.64□□□□□ -0.07
SHMT2-235ENST00000557740 B3GNT8Q7Z7M8 397 aa14.64□□□□□ -0.07
SHMT2-235ENST00000557740 CLEC14AQ86T13 490 aa14.64□□□□□ -0.07
SHMT2-235ENST00000557740 LRRC49Q8IUZ0 686 aa14.64□□□□□ -0.07
SHMT2-235ENST00000557740 PELI3Q8N2H9 469 aa14.64□□□□□ -0.07
SHMT2-235ENST00000557740 KIAA1524Q8TCG1 905 aa14.64□□□□□ -0.07
SHMT2-235ENST00000557740 DTD2Q96FN9 168 aa14.64□□□□□ -0.07
SHMT2-235ENST00000557740 PRR11Q96HE9 360 aaPredicted RBP14.64□□□□□ -0.07
SHMT2-235ENST00000557740 FOXP3Q9BZS1 431 aa14.64□□□□□ -0.07
SHMT2-235ENST00000557740 CARS2Q9HA77 564 aaKnown RBP14.64□□□□□ -0.07
SHMT2-235ENST00000557740 NT5MQ9NPB1 228 aa14.64□□□□□ -0.07
SHMT2-235ENST00000557740 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.64□□□□□ -0.07
SHMT2-235ENST00000557740 CAPN11Q9UMQ6 739 aa14.64□□□□□ -0.07
SHMT2-235ENST00000557740 SMG1Q96Q15 3661 aaKnown RBP14.63□□□□□ -0.07
SHMT2-235ENST00000557740 LRRK1Q38SD2 2015 aa14.63□□□□□ -0.07
SHMT2-235ENST00000557740 A0A087X0T9 212 aa14.63□□□□□ -0.07
SHMT2-235ENST00000557740 A0A1W2PQM1 296 aa14.63□□□□□ -0.07
SHMT2-235ENST00000557740 NPIPB15A6NHN6 443 aaPredicted RBP14.63□□□□□ -0.07
SHMT2-235ENST00000557740 ERVH48-1M5A8F1 160 aa14.63□□□□□ -0.07
SHMT2-235ENST00000557740 PSMD11O00231 422 aa14.63□□□□□ -0.07
SHMT2-235ENST00000557740 MFSD11O43934 449 aa14.63□□□□□ -0.07
SHMT2-235ENST00000557740 NOBOXO60393 691 aa14.63□□□□□ -0.07
SHMT2-235ENST00000557740 FAM228BP0C875 321 aa14.63□□□□□ -0.07
SHMT2-235ENST00000557740 LHCGRP22888 699 aa14.63□□□□□ -0.07
SHMT2-235ENST00000557740 RHDQ02161 417 aa14.63□□□□□ -0.07
SHMT2-235ENST00000557740 ITKQ08881 620 aa14.63□□□□□ -0.07
SHMT2-235ENST00000557740 MMRN1Q13201 1228 aa14.63□□□□□ -0.07
SHMT2-235ENST00000557740 TAF1BQ53T94 588 aaPredicted RBP14.63□□□□□ -0.07
SHMT2-235ENST00000557740 CCDC122Q5T0U0 273 aa14.63□□□□□ -0.07
SHMT2-235ENST00000557740 RAB11FIP2Q7L804 512 aa14.63□□□□□ -0.07
SHMT2-235ENST00000557740 HSD11B1LQ7Z5J1 315 aa14.63□□□□□ -0.07
SHMT2-235ENST00000557740 JAMLQ86YT9 394 aa14.63□□□□□ -0.07
SHMT2-235ENST00000557740 NDUFAF2Q8N183 169 aa14.63□□□□□ -0.07
SHMT2-235ENST00000557740 FBXO39Q8N4B4 442 aa14.63□□□□□ -0.07
SHMT2-235ENST00000557740 CCL4L1Q8NHW4 92 aa14.63□□□□□ -0.07
SHMT2-235ENST00000557740 ZNF564Q8TBZ8 553 aaPredicted RBP14.63□□□□□ -0.07
SHMT2-235ENST00000557740 MCCC1Q96RQ3 725 aaPredicted RBP14.63□□□□□ -0.07
SHMT2-235ENST00000557740 GSDMCQ9BYG8 508 aa14.63□□□□□ -0.07
SHMT2-235ENST00000557740 POLR1EQ9GZS1 481 aaKnown RBP14.63□□□□□ -0.07
SHMT2-235ENST00000557740 HAUS2Q9NVX0 235 aa14.63□□□□□ -0.07
SHMT2-235ENST00000557740 WDR70Q9NW82 654 aa14.63□□□□□ -0.07
SHMT2-235ENST00000557740 APPL1Q9UKG1 709 aa14.63□□□□□ -0.07
SHMT2-235ENST00000557740 COL27A1Q8IZC6 1860 aaPredicted RBP14.63□□□□□ -0.07
SHMT2-235ENST00000557740 LRP4O75096 1905 aa14.62□□□□□ -0.07
SHMT2-235ENST00000557740 NUDT21O43809 227 aaKnown RBP14.62□□□□□ -0.07
SHMT2-235ENST00000557740 JMJD7P0C870 316 aa14.62□□□□□ -0.07
SHMT2-235ENST00000557740 PNLIPP16233 465 aa14.62□□□□□ -0.07
SHMT2-235ENST00000557740 CTPS1P17812 591 aa14.62□□□□□ -0.07
SHMT2-235ENST00000557740 CCKBRP32239 447 aa14.62□□□□□ -0.07
SHMT2-235ENST00000557740 UGT1A5P35504 534 aa14.62□□□□□ -0.07
SHMT2-235ENST00000557740 GARSP41250 739 aaKnown RBP14.62□□□□□ -0.07
SHMT2-235ENST00000557740 GNPDA1P46926 289 aa14.62□□□□□ -0.07
SHMT2-235ENST00000557740 EPHB1P54762 984 aa14.62□□□□□ -0.07
SHMT2-235ENST00000557740 SKOR1P84550 965 aa14.62□□□□□ -0.07
SHMT2-235ENST00000557740 CDK3Q00526 305 aa14.62□□□□□ -0.07
SHMT2-235ENST00000557740 VAC14Q08AM6 782 aa14.62□□□□□ -0.07
SHMT2-235ENST00000557740 BIRC2Q13490 618 aa14.62□□□□□ -0.07
SHMT2-235ENST00000557740 HLTFQ14527 1009 aaKnown RBP eCLIP14.62□□□□□ -0.07
SHMT2-235ENST00000557740 TIGD7Q6NT04 549 aaPredicted RBP14.62□□□□□ -0.07
SHMT2-235ENST00000557740 OGFOD3Q6PK18 319 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms