RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 ETV3P41162 512 aa13.6□□□□□ -0.23
SHMT2-228ENST00000557302 ARRB1P49407 418 aaPredicted RBP13.6□□□□□ -0.23
SHMT2-228ENST00000557302 CCT8P50990 548 aa13.6□□□□□ -0.23
SHMT2-228ENST00000557302 GNG11P61952 73 aa13.6□□□□□ -0.23
SHMT2-228ENST00000557302 SLC14A1Q13336 389 aa13.6□□□□□ -0.23
SHMT2-228ENST00000557302 SNX1Q13596 522 aa13.6□□□□□ -0.23
SHMT2-228ENST00000557302 SIX1Q15475 284 aaPredicted RBP13.6□□□□□ -0.23
SHMT2-228ENST00000557302 OASLQ15646 514 aaKnown RBP13.6□□□□□ -0.23
SHMT2-228ENST00000557302 CCNG2Q16589 344 aa13.6□□□□□ -0.23
SHMT2-228ENST00000557302 PRAMEF14Q5SWL7 426 aa13.6□□□□□ -0.23
SHMT2-228ENST00000557302 HSD11B1LQ7Z5J1 315 aa13.6□□□□□ -0.23
SHMT2-228ENST00000557302 SPATS2Q86XZ4 545 aaKnown RBP13.6□□□□□ -0.23
SHMT2-228ENST00000557302 CBARPQ8N350 705 aaPredicted RBP13.6□□□□□ -0.23
SHMT2-228ENST00000557302 IPMKQ8NFU5 416 aa13.6□□□□□ -0.23
SHMT2-228ENST00000557302 NUS1Q96E22 293 aa13.6□□□□□ -0.23
SHMT2-228ENST00000557302 DTD2Q96FN9 168 aa13.6□□□□□ -0.23
SHMT2-228ENST00000557302 MRGPRX2Q96LB1 330 aa13.6□□□□□ -0.23
SHMT2-228ENST00000557302 ELF4Q99607 663 aaPredicted RBP13.6□□□□□ -0.23
SHMT2-228ENST00000557302 RTKNQ9BST9 563 aa13.6□□□□□ -0.23
SHMT2-228ENST00000557302 FSD1LQ9BXM9 530 aa13.6□□□□□ -0.23
SHMT2-228ENST00000557302 TM7SF3Q9NS93 570 aa13.6□□□□□ -0.23
SHMT2-228ENST00000557302 DLL3Q9NYJ7 618 aa13.6□□□□□ -0.23
SHMT2-228ENST00000557302 AAR2Q9Y312 384 aaKnown RBP13.6□□□□□ -0.23
SHMT2-228ENST00000557302 ADAMTS9Q9P2N4 1935 aa13.59□□□□□ -0.23
SHMT2-228ENST00000557302 A0A0U1RQS6 177 aa13.59□□□□□ -0.23
SHMT2-228ENST00000557302 A0A1B0GTQ1 180 aa13.59□□□□□ -0.23
SHMT2-228ENST00000557302 LOC285095A0A1B0GVY8 99 aa13.59□□□□□ -0.23
SHMT2-228ENST00000557302 YKT6O15498 198 aa13.59□□□□□ -0.23
SHMT2-228ENST00000557302 CLDN7O95471 211 aa13.59□□□□□ -0.23
SHMT2-228ENST00000557302 EPOP01588 193 aa13.59□□□□□ -0.23
SHMT2-228ENST00000557302 PCCBP05166 539 aa13.59□□□□□ -0.23
SHMT2-228ENST00000557302 STC1P52823 247 aa13.59□□□□□ -0.23
SHMT2-228ENST00000557302 THOP1P52888 689 aa13.59□□□□□ -0.23
SHMT2-228ENST00000557302 GDF10P55107 478 aa13.59□□□□□ -0.23
SHMT2-228ENST00000557302 PFN3P60673 137 aa13.59□□□□□ -0.23
SHMT2-228ENST00000557302 YPEL5P62699 121 aa13.59□□□□□ -0.23
SHMT2-228ENST00000557302 MTM1Q13496 603 aa13.59□□□□□ -0.23
SHMT2-228ENST00000557302 PDE1CQ14123 709 aaPredicted RBP13.59□□□□□ -0.23
SHMT2-228ENST00000557302 PARP6Q2NL67 630 aa13.59□□□□□ -0.23
SHMT2-228ENST00000557302 KDM7AQ6ZMT4 941 aa13.59□□□□□ -0.23
SHMT2-228ENST00000557302 Q6ZVL8 140 aa13.59□□□□□ -0.23
SHMT2-228ENST00000557302 SLC22A18ASQ8N1D0 253 aa13.59□□□□□ -0.23
SHMT2-228ENST00000557302 RASGEF1CQ8N431 466 aa13.59□□□□□ -0.23
SHMT2-228ENST00000557302 CCHCR1Q8TD31 782 aa13.59□□□□□ -0.23
SHMT2-228ENST00000557302 LRRC45Q96CN5 670 aa13.59□□□□□ -0.23
SHMT2-228ENST00000557302 RTP4Q96DX8 246 aa13.59□□□□□ -0.23
SHMT2-228ENST00000557302 SRPK1Q96SB4 655 aaKnown RBP13.59□□□□□ -0.23
SHMT2-228ENST00000557302 OSBPL9Q96SU4 736 aa13.59□□□□□ -0.23
SHMT2-228ENST00000557302 NAP1L3Q99457 506 aaPredicted RBP13.59□□□□□ -0.23
SHMT2-228ENST00000557302 GORASP1Q9BQQ3 440 aa13.59□□□□□ -0.23
SHMT2-228ENST00000557302 GPR27Q9NS67 375 aa13.59□□□□□ -0.23
SHMT2-228ENST00000557302 HOMER3Q9NSC5 361 aa13.59□□□□□ -0.23
SHMT2-228ENST00000557302 CABIN1Q9Y6J0 2220 aa13.58□□□□□ -0.24
SHMT2-228ENST00000557302 SPTY2D1-AS1A0A0U1RR47 76 aa13.58□□□□□ -0.24
SHMT2-228ENST00000557302 GOLGA6CA6NDK9 693 aa13.58□□□□□ -0.24
SHMT2-228ENST00000557302 GOLGA6BA6NDN3 693 aa13.58□□□□□ -0.24
SHMT2-228ENST00000557302 IFNB1P01574 187 aa13.58□□□□□ -0.24
SHMT2-228ENST00000557302 ITGAVP06756 1048 aa13.58□□□□□ -0.24
SHMT2-228ENST00000557302 C1SP09871 688 aa13.58□□□□□ -0.24
SHMT2-228ENST00000557302 ATXN1LP0C7T5 689 aaKnown RBP13.58□□□□□ -0.24
SHMT2-228ENST00000557302 PIRTP0C851 137 aa13.58□□□□□ -0.24
SHMT2-228ENST00000557302 GOLGA6DP0CG33 693 aa13.58□□□□□ -0.24
SHMT2-228ENST00000557302 HLA-DPA1P20036 260 aa13.58□□□□□ -0.24
SHMT2-228ENST00000557302 ACTN2P35609 894 aa13.58□□□□□ -0.24
SHMT2-228ENST00000557302 ID4P47928 161 aa13.58□□□□□ -0.24
SHMT2-228ENST00000557302 PTSQ03393 145 aa13.58□□□□□ -0.24
SHMT2-228ENST00000557302 PTK2BQ14289 1009 aa13.58□□□□□ -0.24
SHMT2-228ENST00000557302 INPP5AQ14642 412 aa13.58□□□□□ -0.24
SHMT2-228ENST00000557302 PUM1Q14671 1186 aaKnown RBP eCLIP13.58□□□□□ -0.24
SHMT2-228ENST00000557302 SUZ12Q15022 739 aaKnown RBP13.58□□□□□ -0.24
SHMT2-228ENST00000557302 CDKN3Q16667 212 aa13.58□□□□□ -0.24
SHMT2-228ENST00000557302 P3H1Q32P28 736 aa13.58□□□□□ -0.24
SHMT2-228ENST00000557302 ESRP1Q6NXG1 681 aaKnown RBP13.58□□□□□ -0.24
SHMT2-228ENST00000557302 DRICH1Q6PGQ1 229 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-228ENST00000557302 ERMP1Q7Z2K6 904 aa13.58□□□□□ -0.24
SHMT2-228ENST00000557302 TECPR1Q7Z6L1 1165 aa13.58□□□□□ -0.24
SHMT2-228ENST00000557302 PARGQ86W56 976 aa13.58□□□□□ -0.24
SHMT2-228ENST00000557302 RAVER1Q8IY67 606 aaKnown RBP13.58□□□□□ -0.24
SHMT2-228ENST00000557302 SLC25A41Q8N5S1 370 aa13.58□□□□□ -0.24
SHMT2-228ENST00000557302 PLA2G15Q8NCC3 412 aa13.58□□□□□ -0.24
SHMT2-228ENST00000557302 FICDQ9BVA6 458 aa13.58□□□□□ -0.24
SHMT2-228ENST00000557302 MAGEE1Q9HCI5 957 aa13.58□□□□□ -0.24
SHMT2-228ENST00000557302 KCND1Q9NSA2 647 aa13.58□□□□□ -0.24
SHMT2-228ENST00000557302 GOLGA6AQ9NYA3 693 aa13.58□□□□□ -0.24
SHMT2-228ENST00000557302 TTC7AQ9ULT0 858 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-228ENST00000557302 SNX12Q9UMY4 172 aa13.58□□□□□ -0.24
SHMT2-228ENST00000557302 ZNF711Q9Y462 761 aa13.58□□□□□ -0.24
SHMT2-228ENST00000557302 PCDHGB2Q9Y5G2 931 aa13.58□□□□□ -0.24
SHMT2-228ENST00000557302 ASCC3Q8N3C0 2202 aaKnown RBP13.58□□□□□ -0.24
SHMT2-228ENST00000557302 PGRMC1O00264 195 aaKnown RBP13.57□□□□□ -0.24
SHMT2-228ENST00000557302 CES2O00748 559 aa13.57□□□□□ -0.24
SHMT2-228ENST00000557302 TM4SF5O14894 197 aa13.57□□□□□ -0.24
SHMT2-228ENST00000557302 PCDHGA12O60330 932 aa13.57□□□□□ -0.24
SHMT2-228ENST00000557302 SLC4A1P02730 911 aa13.57□□□□□ -0.24
SHMT2-228ENST00000557302 FGF1P05230 155 aa13.57□□□□□ -0.24
SHMT2-228ENST00000557302 CD59P13987 128 aa13.57□□□□□ -0.24
SHMT2-228ENST00000557302 TSHRP16473 764 aa13.57□□□□□ -0.24
SHMT2-228ENST00000557302 HTR1BP28222 390 aa13.57□□□□□ -0.24
SHMT2-228ENST00000557302 EPHA8P29322 1005 aaPredicted RBP13.57□□□□□ -0.24
SHMT2-228ENST00000557302 CHRNA4P43681 627 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms