RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 PCCBP05166 539 aa10.69□□□□□ -0.7
LINC00239-201ENST00000556973 HOXC4P09017 264 aaPredicted RBP10.69□□□□□ -0.7
LINC00239-201ENST00000556973 NFKB1P19838 968 aa10.69□□□□□ -0.7
LINC00239-201ENST00000556973 DGKAP23743 735 aa10.69□□□□□ -0.7
LINC00239-201ENST00000556973 EPHA8P29322 1005 aaPredicted RBP10.69□□□□□ -0.7
LINC00239-201ENST00000556973 TRIM23P36406 574 aa10.69□□□□□ -0.7
LINC00239-201ENST00000556973 TNNT3P45378 269 aaPredicted RBP10.69□□□□□ -0.7
LINC00239-201ENST00000556973 HNRNPKP61978 463 aaKnown RBP eCLIP10.69□□□□□ -0.7
LINC00239-201ENST00000556973 FOXK2Q01167 660 aa10.69□□□□□ -0.7
LINC00239-201ENST00000556973 DPTQ07507 201 aa10.69□□□□□ -0.7
LINC00239-201ENST00000556973 MPP3Q13368 585 aa10.69□□□□□ -0.7
LINC00239-201ENST00000556973 GALNT3Q14435 633 aa10.69□□□□□ -0.7
LINC00239-201ENST00000556973 PCSK7Q16549 785 aa10.69□□□□□ -0.7
LINC00239-201ENST00000556973 CDKN3Q16667 212 aa10.69□□□□□ -0.7
LINC00239-201ENST00000556973 ANKRD20A2Q5SQ80 823 aa10.69□□□□□ -0.7
LINC00239-201ENST00000556973 ANKRD20A1Q5TYW2 823 aa10.69□□□□□ -0.7
LINC00239-201ENST00000556973 ANKRD20A3Q5VUR7 823 aa10.69□□□□□ -0.7
LINC00239-201ENST00000556973 LRRC66Q68CR7 880 aa10.69□□□□□ -0.7
LINC00239-201ENST00000556973 ITPRIPL1Q6GPH6 555 aa10.69□□□□□ -0.7
LINC00239-201ENST00000556973 ESRP1Q6NXG1 681 aaKnown RBP10.69□□□□□ -0.7
LINC00239-201ENST00000556973 PNCKQ6P2M8 343 aa10.69□□□□□ -0.7
LINC00239-201ENST00000556973 KANSL1Q7Z3B3 1105 aa10.69□□□□□ -0.7
LINC00239-201ENST00000556973 KDELC2Q7Z4H8 507 aa10.69□□□□□ -0.7
LINC00239-201ENST00000556973 TECPR1Q7Z6L1 1165 aa10.69□□□□□ -0.7
LINC00239-201ENST00000556973 GLRX5Q86SX6 157 aa10.69□□□□□ -0.7
LINC00239-201ENST00000556973 GATAD2AQ86YP4 633 aa10.69□□□□□ -0.7
LINC00239-201ENST00000556973 SLC13A5Q86YT5 568 aaPredicted RBP10.69□□□□□ -0.7
LINC00239-201ENST00000556973 NRSN1Q8IZ57 195 aa10.69□□□□□ -0.7
LINC00239-201ENST00000556973 PLA2G15Q8NCC3 412 aa10.69□□□□□ -0.7
LINC00239-201ENST00000556973 ATL2Q8NHH9 583 aa10.69□□□□□ -0.7
LINC00239-201ENST00000556973 CCHCR1Q8TD31 782 aa10.69□□□□□ -0.7
LINC00239-201ENST00000556973 NUS1Q96E22 293 aa10.69□□□□□ -0.7
LINC00239-201ENST00000556973 DTD2Q96FN9 168 aa10.69□□□□□ -0.7
LINC00239-201ENST00000556973 PPP1R2P1Q96PQ5 205 aa10.69□□□□□ -0.7
LINC00239-201ENST00000556973 TRIB3Q96RU7 358 aa10.69□□□□□ -0.7
LINC00239-201ENST00000556973 FAM118BQ9BPY3 351 aa10.69□□□□□ -0.7
LINC00239-201ENST00000556973 C10orf88Q9H8K7 445 aa10.69□□□□□ -0.7
LINC00239-201ENST00000556973 DNAJC28Q9NX36 388 aa10.69□□□□□ -0.7
LINC00239-201ENST00000556973 UBP1Q9NZI7 540 aa10.69□□□□□ -0.7
LINC00239-201ENST00000556973 RSPH14Q9UHP6 348 aa10.69□□□□□ -0.7
LINC00239-201ENST00000556973 AAR2Q9Y312 384 aaKnown RBP10.69□□□□□ -0.7
LINC00239-201ENST00000556973 TDRD6O60522 2096 aaKnown RBP10.69□□□□□ -0.7
LINC00239-201ENST00000556973 ASCC3Q8N3C0 2202 aaKnown RBP10.68□□□□□ -0.7
LINC00239-201ENST00000556973 TCRBV7S2A1N4TA0A589 114 aa10.68□□□□□ -0.7
LINC00239-201ENST00000556973 RGSL1A5PLK6 1076 aa10.68□□□□□ -0.7
LINC00239-201ENST00000556973 C5orf60A6NFR6 353 aa10.68□□□□□ -0.7
LINC00239-201ENST00000556973 NEMP2A6NFY4 417 aa10.68□□□□□ -0.7
LINC00239-201ENST00000556973 GOLGA8CPA6NN73 597 aa10.68□□□□□ -0.7
LINC00239-201ENST00000556973 H3BM21 787 aa10.68□□□□□ -0.7
LINC00239-201ENST00000556973 CACNB4O00305 520 aaPredicted RBP10.68□□□□□ -0.7
LINC00239-201ENST00000556973 PDE2AO00408 941 aaPredicted RBP10.68□□□□□ -0.7
LINC00239-201ENST00000556973 PMPCBO75439 489 aa10.68□□□□□ -0.7
LINC00239-201ENST00000556973 PIAS2O75928 621 aa10.68□□□□□ -0.7
LINC00239-201ENST00000556973 ANXA9O76027 345 aa10.68□□□□□ -0.7
LINC00239-201ENST00000556973 CLDN7O95471 211 aa10.68□□□□□ -0.7
LINC00239-201ENST00000556973 TSHRP16473 764 aa10.68□□□□□ -0.7
LINC00239-201ENST00000556973 KCNA4P22459 653 aa10.68□□□□□ -0.7
LINC00239-201ENST00000556973 KELP23276 732 aa10.68□□□□□ -0.7
LINC00239-201ENST00000556973 STIP1P31948 543 aaKnown RBP10.68□□□□□ -0.7
LINC00239-201ENST00000556973 ETV3P41162 512 aa10.68□□□□□ -0.7
LINC00239-201ENST00000556973 BLKP51451 505 aa10.68□□□□□ -0.7
LINC00239-201ENST00000556973 STC1P52823 247 aa10.68□□□□□ -0.7
LINC00239-201ENST00000556973 GEMP55040 296 aa10.68□□□□□ -0.7
LINC00239-201ENST00000556973 WNT3AP56704 352 aa10.68□□□□□ -0.7
LINC00239-201ENST00000556973 PPARDQ03181 441 aa10.68□□□□□ -0.7
LINC00239-201ENST00000556973 PRPSAP1Q14558 356 aa10.68□□□□□ -0.7
LINC00239-201ENST00000556973 NFATC4Q14934 902 aa10.68□□□□□ -0.7
LINC00239-201ENST00000556973 ZNF542PQ5EBM4 170 aa10.68□□□□□ -0.7
LINC00239-201ENST00000556973 N4BP2L1Q5TBK1 243 aaPredicted RBP10.68□□□□□ -0.7
LINC00239-201ENST00000556973 KDELC1Q6UW63 502 aa10.68□□□□□ -0.7
LINC00239-201ENST00000556973 ENPP7Q6UWV6 458 aa10.68□□□□□ -0.7
LINC00239-201ENST00000556973 MACC1Q6ZN28 852 aa10.68□□□□□ -0.7
LINC00239-201ENST00000556973 Q6ZVL8 140 aa10.68□□□□□ -0.7
LINC00239-201ENST00000556973 ZNF765Q7L2R6 523 aa10.68□□□□□ -0.7
LINC00239-201ENST00000556973 REXO1L1PQ8IX06 675 aa10.68□□□□□ -0.7
LINC00239-201ENST00000556973 SLC35B2Q8TB61 432 aa10.68□□□□□ -0.7
LINC00239-201ENST00000556973 BAHD1Q8TBE0 780 aaPredicted RBP10.68□□□□□ -0.7
LINC00239-201ENST00000556973 TBATAQ96M53 351 aa10.68□□□□□ -0.7
LINC00239-201ENST00000556973 SMIM14Q96QK8 99 aa10.68□□□□□ -0.7
LINC00239-201ENST00000556973 TLR10Q9BXR5 811 aa10.68□□□□□ -0.7
LINC00239-201ENST00000556973 KCNF1Q9H3M0 494 aa10.68□□□□□ -0.7
LINC00239-201ENST00000556973 ZFYVE1Q9HBF4 777 aa10.68□□□□□ -0.7
LINC00239-201ENST00000556973 BTBD3Q9Y2F9 522 aa10.68□□□□□ -0.7
LINC00239-201ENST00000556973 OR1A2Q9Y585 309 aa10.68□□□□□ -0.7
LINC00239-201ENST00000556973 A0A0U1RQS6 177 aa10.67□□□□□ -0.7
LINC00239-201ENST00000556973 C1orf232A0A0U1RR37 186 aa10.67□□□□□ -0.7
LINC00239-201ENST00000556973 SPAARA0A1B0GVQ0 90 aa10.67□□□□□ -0.7
LINC00239-201ENST00000556973 TNFRSF10CO14798 259 aa10.67□□□□□ -0.7
LINC00239-201ENST00000556973 SCAMP1O15126 338 aa10.67□□□□□ -0.7
LINC00239-201ENST00000556973 TNFSF14O43557 240 aa10.67□□□□□ -0.7
LINC00239-201ENST00000556973 GCATO75600 419 aa10.67□□□□□ -0.7
LINC00239-201ENST00000556973 LDOC1O95751 146 aaPredicted RBP10.67□□□□□ -0.7
LINC00239-201ENST00000556973 PYGLP06737 847 aa10.67□□□□□ -0.7
LINC00239-201ENST00000556973 C1SP09871 688 aa10.67□□□□□ -0.7
LINC00239-201ENST00000556973 NME1P15531 152 aaKnown RBP10.67□□□□□ -0.7
LINC00239-201ENST00000556973 JUNDP17535 347 aa10.67□□□□□ -0.7
LINC00239-201ENST00000556973 MSNP26038 577 aaKnown RBP10.67□□□□□ -0.7
LINC00239-201ENST00000556973 TEAD1P28347 426 aa10.67□□□□□ -0.7
LINC00239-201ENST00000556973 KIAA1024LP59773 190 aa10.67□□□□□ -0.7
LINC00239-201ENST00000556973 SIM1P81133 766 aaPredicted RBP10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms