RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 ZNF517Q6ZMY9 492 aaPredicted RBP13.84□□□□□ -0.19
SHMT2-226ENST00000556825 DPP9Q86TI2 863 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 RAB43Q86YS6 212 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 SPATA2LQ8IUW3 424 aaPredicted RBP13.84□□□□□ -0.19
SHMT2-226ENST00000556825 PDIK1LQ8N165 341 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 MCFD2Q8NI22 146 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 CPT1BQ92523 772 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 OR52B2Q96RD2 323 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 MMP27Q9H306 513 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 CYP4F12Q9HCS2 524 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 BRD7Q9NPI1 651 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 ZNF224Q9NZL3 707 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 NUDT5Q9UKK9 219 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 MRPL11Q9Y3B7 192 aaKnown RBP13.84□□□□□ -0.19
SHMT2-226ENST00000556825 COPG1Q9Y678 874 aaKnown RBP13.84□□□□□ -0.19
SHMT2-226ENST00000556825 CDY2AQ9Y6F7 541 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 HSPE1-MOB4S4R3N1 261 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 NUP98P52948 1817 aa13.84□□□□□ -0.19
SHMT2-226ENST00000556825 POTEMA6NI47 508 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 TCP10L2B9ZVM9 353 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 H0YAE9 185 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 RGS5O15539 181 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 GRIN3BO60391 1043 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 GMDSO60547 372 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 GREM1O60565 184 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 SNX4O95219 450 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 SNAPINO95295 136 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 ALOX12P18054 663 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 CACNB1Q02641 598 aaPredicted RBP13.83□□□□□ -0.2
SHMT2-226ENST00000556825 MROH9Q5TGP6 573 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 PLA2G4FQ68DD2 849 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 CFAP77Q6ZQR2 320 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 STRADAQ7RTN6 431 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 GPAT4Q86UL3 456 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 KATNAL2Q8IYT4 538 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 PPM1NQ8N819 430 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 FAM71DQ8N9W8 422 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 OR10T2Q8NGX3 314 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 GTF3C2Q8WUA4 911 aaPredicted RBP13.83□□□□□ -0.2
SHMT2-226ENST00000556825 MAGEB10Q96LZ2 347 aaPredicted RBP13.83□□□□□ -0.2
SHMT2-226ENST00000556825 KATNAL1Q9BW62 490 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 ASPSCR1Q9BZE9 553 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 LHX5Q9H2C1 402 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 EVA1BQ9NVM1 165 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 MAGED2Q9UNF1 606 aaPredicted RBP13.83□□□□□ -0.2
SHMT2-226ENST00000556825 TRAV20A0A0B4J274 112 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 PIK3R2O00459 728 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 PSTPIP1O43586 416 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 SSX4O60224 188 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 BMP3P12645 472 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 POU2F1P14859 743 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 TNNI3P19429 210 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 PSME3P61289 254 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 IKZF1Q13422 519 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 ZNF273Q14593 569 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 R3HCC1LQ7Z5L2 792 aaKnown RBP13.83□□□□□ -0.2
SHMT2-226ENST00000556825 IGDCC3Q8IVU1 814 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 CNTD1Q8N815 330 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 SMG8Q8ND04 991 aaKnown RBP13.83□□□□□ -0.2
SHMT2-226ENST00000556825 RC3H2Q9HBD1 1191 aaKnown RBP13.83□□□□□ -0.2
SHMT2-226ENST00000556825 BARHL2Q9NY43 387 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 KLHL42Q9P2K6 505 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 OSGIN1Q9UJX0 560 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 COPS3Q9UNS2 423 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 HRH3Q9Y5N1 445 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 CDY1Q9Y6F8 540 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 SLIT2O94813 1529 aa13.83□□□□□ -0.2
SHMT2-226ENST00000556825 DLEC1Q9Y238 1755 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 SH3D21A4FU49 640 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 ZNF99A8MXY4 864 aaPredicted RBP13.82□□□□□ -0.2
SHMT2-226ENST00000556825 LINC00587B1AMM8 73 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 INMTO95050 263 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 APOC1P02654 83 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 CHRNA1P02708 482 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 TYK2P29597 1187 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 GGT5P36269 586 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 ELK3P41970 407 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 RPS5P46782 204 aaKnown RBP13.82□□□□□ -0.2
SHMT2-226ENST00000556825 TFAMQ00059 246 aaKnown RBP13.82□□□□□ -0.2
SHMT2-226ENST00000556825 BTN1A1Q13410 526 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 GRM7Q14831 915 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 DPY19L1Q2PZI1 675 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 ZNF484Q5JVG2 852 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 RSBN1LQ6PCB5 846 aaPredicted RBP13.82□□□□□ -0.2
SHMT2-226ENST00000556825 CYP2R1Q6VVX0 501 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 ZBTB38Q8NAP3 1195 aaPredicted RBP13.82□□□□□ -0.2
SHMT2-226ENST00000556825 SYTL5Q8TDW5 730 aaPredicted RBP13.82□□□□□ -0.2
SHMT2-226ENST00000556825 CANT1Q8WVQ1 401 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 ST8SIA4Q92187 359 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 SMG7Q92540 1137 aaKnown RBP13.82□□□□□ -0.2
SHMT2-226ENST00000556825 FOPNLQ96NB1 174 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 MLPHQ9BV36 600 aaPredicted RBP13.82□□□□□ -0.2
SHMT2-226ENST00000556825 APOL5Q9BWW9 433 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 AGPAT4Q9NRZ5 378 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 CCM2LQ9NUG4 571 aaPredicted RBP13.82□□□□□ -0.2
SHMT2-226ENST00000556825 NOCTQ9UK39 431 aaKnown RBP13.82□□□□□ -0.2
SHMT2-226ENST00000556825 GINS2Q9Y248 185 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 BTBD3Q9Y2F9 522 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 ACTL7AQ9Y615 435 aa13.82□□□□□ -0.2
SHMT2-226ENST00000556825 HEATR9A2RTY3 570 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms