RNA–Protein interactions for RNA: ENST00000553923.1

SRP54-204, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-204ENST00000553923 CPT1BQ92523 772 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 RSC1A1Q92681 617 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 CD101Q93033 1021 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 JAKMIP2Q96AA8 810 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 TBC1D31Q96DN5 1066 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 APOPT1Q96IL0 206 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 TUBA1CQ9BQE3 449 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 ADPGKQ9BRR6 497 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 DESI2Q9BSY9 194 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 MECRQ9BV79 373 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 ITPAQ9BY32 194 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 ZNF696Q9H7X3 374 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 DBNDD1Q9H9R9 158 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 MALT1Q9UDY8 824 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 DAPP1Q9UN19 280 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 DNAJC16Q9Y2G8 782 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 ZNF711Q9Y462 761 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 PCDHGB5Q9Y5G0 923 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 SNX8Q9Y5X2 465 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 PIAS3Q9Y6X2 628 aa2.39□□□□□ -2.03
SRP54-204ENST00000553923 SOS1Q07889 1333 aaPredicted RBP2.39□□□□□ -2.03
SRP54-204ENST00000553923 GTPBP10A4D1E9 387 aaKnown RBP2.38□□□□□ -2.03
SRP54-204ENST00000553923 VWA3AA6NCI4 1184 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 MBD3L5A6NJ08 208 aaPredicted RBP2.38□□□□□ -2.03
SRP54-204ENST00000553923 SLC38A8A6NNN8 435 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 P2RY10O00398 339 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 TNPO2O14787 897 aaKnown RBP2.38□□□□□ -2.03
SRP54-204ENST00000553923 TSPAN4O14817 238 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 VILLO15195 856 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 KIF1CO43896 1103 aaKnown RBP2.38□□□□□ -2.03
SRP54-204ENST00000553923 TSPAN3O60637 253 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 HNRNPCL1O60812 293 aaKnown RBP2.38□□□□□ -2.03
SRP54-204ENST00000553923 SCGB1D1O95968 90 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 SPARCP09486 303 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 CSF1P09603 554 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 CSH1P0DML2 217 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 CSH2P0DML3 217 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 FGF5P12034 268 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 ENO3P13929 434 aaPredicted RBP2.38□□□□□ -2.03
SRP54-204ENST00000553923 PRKCHP24723 683 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 SERPINA4P29622 427 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 GCH1P30793 250 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 TIMP3P35625 211 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 PPARGP37231 505 aaPredicted RBP2.38□□□□□ -2.03
SRP54-204ENST00000553923 EIF2DP41214 584 aaKnown RBP2.38□□□□□ -2.03
SRP54-204ENST00000553923 CTCFP49711 727 aaPredicted RBP2.38□□□□□ -2.03
SRP54-204ENST00000553923 RCAN1P53805 252 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 KRTAP10-8P60410 259 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 RPS3AP61247 264 aaKnown RBP2.38□□□□□ -2.03
SRP54-204ENST00000553923 MST1RQ04912 1400 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 KHDRBS1Q07666 443 aaKnown RBP eCLIP2.38□□□□□ -2.03
SRP54-204ENST00000553923 EFR3AQ14156 821 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 GALNTL6Q49A17 601 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 LRRC24Q50LG9 513 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 C1orf141Q5JVX7 400 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 NAA16Q6N069 864 aaPredicted RBP2.38□□□□□ -2.03
SRP54-204ENST00000553923 RHBDF2Q6PJF5 856 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 MFSD6Q6ZSS7 791 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 FOXL2NBQ6ZUU3 175 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 BBS12Q6ZW61 710 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 IKBIPQ70UQ0 350 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 PXKQ7Z7A4 578 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 CEP97Q8IW35 865 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 ZDHHC23Q8IYP9 409 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 CEP57L1Q8IYX8 460 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 CIARTQ8N365 385 aaPredicted RBP2.38□□□□□ -2.03
SRP54-204ENST00000553923 ENDOVQ8N8Q3 282 aaKnown RBP2.38□□□□□ -2.03
SRP54-204ENST00000553923 LINS1Q8NG48 757 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 METTL6Q8TCB7 284 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 USP6NLQ92738 828 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 SNX21Q969T3 373 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 ANKRD9Q96BM1 317 aaPredicted RBP2.38□□□□□ -2.03
SRP54-204ENST00000553923 NSUN4Q96CB9 384 aaKnown RBP2.38□□□□□ -2.03
SRP54-204ENST00000553923 FBXO17Q96EF6 278 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 FAM120BQ96EK7 910 aaKnown RBP2.38□□□□□ -2.03
SRP54-204ENST00000553923 PKNOX2Q96KN3 472 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 GFM1Q96RP9 751 aaKnown RBP2.38□□□□□ -2.03
SRP54-204ENST00000553923 NPAS1Q99742 590 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 DDX23Q9BUQ8 820 aaKnown RBP2.38□□□□□ -2.03
SRP54-204ENST00000553923 MAK16Q9BXY0 300 aaKnown RBP2.38□□□□□ -2.03
SRP54-204ENST00000553923 USP44Q9H0E7 712 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 TTYH1Q9H313 450 aaPredicted RBP2.38□□□□□ -2.03
SRP54-204ENST00000553923 TP63Q9H3D4 680 aaPredicted RBP2.38□□□□□ -2.03
SRP54-204ENST00000553923 SMARCAD1Q9H4L7 1026 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 Q9N2J8 555 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 ATP8A2Q9NTI2 1148 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 NDUFAF4Q9P032 175 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 CNOT7Q9UIV1 285 aaKnown RBP2.38□□□□□ -2.03
SRP54-204ENST00000553923 SLC25A13Q9UJS0 675 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 C19orf53Q9UNZ5 99 aaPredicted RBP2.38□□□□□ -2.03
SRP54-204ENST00000553923 PSAT1Q9Y617 370 aa2.38□□□□□ -2.03
SRP54-204ENST00000553923 TDRD9Q8NDG6 1382 aaKnown RBP2.37□□□□□ -2.03
SRP54-204ENST00000553923 A0A1B0GVM2 712 aa2.37□□□□□ -2.03
SRP54-204ENST00000553923 FAM172BPA6NC97 362 aa2.37□□□□□ -2.03
SRP54-204ENST00000553923 AGAP5A6NIR3 686 aa2.37□□□□□ -2.03
SRP54-204ENST00000553923 EFCAB8A8MWE9 144 aa2.37□□□□□ -2.03
SRP54-204ENST00000553923 ITM2AO43736 263 aa2.37□□□□□ -2.03
SRP54-204ENST00000553923 TMCC1O94876 653 aa2.37□□□□□ -2.03
SRP54-204ENST00000553923 TMEM63AO94886 807 aa2.37□□□□□ -2.03
SRP54-204ENST00000553923 SLU7O95391 586 aaKnown RBP2.37□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms