RNA–Protein interactions for RNA: ENST00000553488.5

ATXN3-219, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 1,065 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-219ENST00000553488 PRAMEF10O60809 474 aa7.37□□□□□ -1.23
ATXN3-219ENST00000553488 PPFIA2O75334 1257 aa7.37□□□□□ -1.23
ATXN3-219ENST00000553488 GRAP2O75791 330 aa7.37□□□□□ -1.23
ATXN3-219ENST00000553488 ENDOD1O94919 500 aa7.37□□□□□ -1.23
ATXN3-219ENST00000553488 ZNF202O95125 648 aa7.37□□□□□ -1.23
ATXN3-219ENST00000553488 LETM1O95202 739 aaPredicted RBP7.37□□□□□ -1.23
ATXN3-219ENST00000553488 RPLP0P05388 317 aaKnown RBP7.37□□□□□ -1.23
ATXN3-219ENST00000553488 ANXA6P08133 673 aa7.37□□□□□ -1.23
ATXN3-219ENST00000553488 SFTPCP11686 197 aa7.37□□□□□ -1.23
ATXN3-219ENST00000553488 TFE3P19532 575 aaPredicted RBP7.37□□□□□ -1.23
ATXN3-219ENST00000553488 ITIH1P19827 911 aa7.37□□□□□ -1.23
ATXN3-219ENST00000553488 ETV5P41161 510 aa7.37□□□□□ -1.23
ATXN3-219ENST00000553488 CXCR3P49682 368 aa7.37□□□□□ -1.23
ATXN3-219ENST00000553488 CYP4F2P78329 520 aa7.37□□□□□ -1.23
ATXN3-219ENST00000553488 CCL7P80098 99 aa7.37□□□□□ -1.23
ATXN3-219ENST00000553488 ID3Q02535 119 aa7.37□□□□□ -1.23
ATXN3-219ENST00000553488 NME3Q13232 169 aa7.37□□□□□ -1.23
ATXN3-219ENST00000553488 MTA1Q13330 715 aa7.37□□□□□ -1.23
ATXN3-219ENST00000553488 MAP7Q14244 749 aa7.37□□□□□ -1.23
ATXN3-219ENST00000553488 SLC26A9Q7LBE3 791 aa7.37□□□□□ -1.23
ATXN3-219ENST00000553488 TFAP2DQ7Z6R9 452 aa7.37□□□□□ -1.23
ATXN3-219ENST00000553488 JAMLQ86YT9 394 aa7.37□□□□□ -1.23
ATXN3-219ENST00000553488 TP53I13Q8NBR0 393 aaPredicted RBP7.37□□□□□ -1.23
ATXN3-219ENST00000553488 SPATA20Q8TB22 786 aa7.37□□□□□ -1.23
ATXN3-219ENST00000553488 RAB7BQ96AH8 199 aa7.37□□□□□ -1.23
ATXN3-219ENST00000553488 GFM1Q96RP9 751 aaKnown RBP7.37□□□□□ -1.23
ATXN3-219ENST00000553488 NPY6RQ99463 290 aa7.37□□□□□ -1.23
ATXN3-219ENST00000553488 HEPHQ9BQS7 1158 aa7.37□□□□□ -1.23
ATXN3-219ENST00000553488 SLC25A18Q9H1K4 315 aa7.37□□□□□ -1.23
ATXN3-219ENST00000553488 EPN3Q9H201 632 aa7.37□□□□□ -1.23
ATXN3-219ENST00000553488 GEMIN8Q9NWZ8 242 aaKnown RBP7.37□□□□□ -1.23
ATXN3-219ENST00000553488 MPP6Q9NZW5 540 aa7.37□□□□□ -1.23
ATXN3-219ENST00000553488 PISDQ9UG56 409 aa7.37□□□□□ -1.23
ATXN3-219ENST00000553488 IPO11Q9UI26 975 aaKnown RBP7.37□□□□□ -1.23
ATXN3-219ENST00000553488 LOXL2Q9Y4K0 774 aa7.37□□□□□ -1.23
ATXN3-219ENST00000553488 CSMD1Q96PZ7 3565 aa7.37□□□□□ -1.23
ATXN3-219ENST00000553488 ANKRD17O75179 2603 aaKnown RBP7.36□□□□□ -1.23
ATXN3-219ENST00000553488 CACNA1DQ01668 2161 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 ILVBLA1L0T0 632 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 C16orf96A6NNT2 1141 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.36□□□□□ -1.23
ATXN3-219ENST00000553488 TMX2-CTNND1H3BSU7 103 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 M0QYT0 321 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 THAP12O43422 761 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 MED7O43513 233 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 ERBB2P04626 1255 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 GP1BBP13224 206 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 KRT5P13647 590 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 CR2P20023 1033 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 GKP32189 559 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 RECQLP46063 649 aaPredicted RBP7.36□□□□□ -1.23
ATXN3-219ENST00000553488 THOP1P52888 689 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 INHBCP55103 352 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 YPEL5P62699 121 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 KRT85P78386 507 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 ZFP36L1Q07352 338 aaKnown RBP7.36□□□□□ -1.23
ATXN3-219ENST00000553488 SGCGQ13326 291 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 PTK2BQ14289 1009 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 MSMPQ1L6U9 139 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 PTPN20Q4JDL3 420 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 CARD16Q5EG05 197 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 EFHC1Q5JVL4 640 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 BRMS1LQ5PSV4 323 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 MANEAQ5SRI9 462 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 KCTD16Q68DU8 428 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 RETSATQ6NUM9 610 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 ESRP1Q6NXG1 681 aaKnown RBP7.36□□□□□ -1.23
ATXN3-219ENST00000553488 ZNF783Q6ZMS7 281 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 TMPRSS9Q7Z410 1059 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 BNIPLQ7Z465 357 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 VPS36Q86VN1 386 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 ZFAND4Q86XD8 727 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 SLITRK4Q8IW52 837 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 TRIM59Q8IWR1 403 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 FSTL5Q8N475 847 aaPredicted RBP7.36□□□□□ -1.23
ATXN3-219ENST00000553488 ZNF397Q8NF99 534 aaPredicted RBP7.36□□□□□ -1.23
ATXN3-219ENST00000553488 OR6K2Q8NGY2 324 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 ZNF564Q8TBZ8 553 aaPredicted RBP7.36□□□□□ -1.23
ATXN3-219ENST00000553488 GPBAR1Q8TDU6 330 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 NT5C3BQ969T7 300 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 PGAP3Q96FM1 320 aaPredicted RBP7.36□□□□□ -1.23
ATXN3-219ENST00000553488 CPEB1Q9BZB8 566 aaKnown RBP7.36□□□□□ -1.23
ATXN3-219ENST00000553488 SLC13A1Q9BZW2 595 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 TM6SF2Q9BZW4 377 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 STRADBQ9C0K7 418 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 INTS2Q9H0H0 1204 aaKnown RBP7.36□□□□□ -1.23
ATXN3-219ENST00000553488 TKTL2Q9H0I9 626 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 SIK2Q9H0K1 926 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 ZDHHC6Q9H6R6 413 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 MBNL1Q9NR56 388 aaKnown RBP7.36□□□□□ -1.23
ATXN3-219ENST00000553488 PCMTD2Q9NV79 361 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 RMND1Q9NWS8 449 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 SIRPGQ9P1W8 387 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 ZDHHC9Q9Y397 364 aa7.36□□□□□ -1.23
ATXN3-219ENST00000553488 DOPEY1Q5JWR5 2465 aa7.35□□□□□ -1.23
ATXN3-219ENST00000553488 SHANK1Q9Y566 2161 aa7.35□□□□□ -1.23
ATXN3-219ENST00000553488 ZNF106Q9H2Y7 1883 aaKnown RBP7.35□□□□□ -1.23
ATXN3-219ENST00000553488 CXorf51AA0A1B0GTR3 108 aa7.35□□□□□ -1.23
ATXN3-219ENST00000553488 A0A1W2PQC6 194 aa7.35□□□□□ -1.23
ATXN3-219ENST00000553488 TOR1BO14657 336 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms