RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 ITKQ08881 620 aa10.89□□□□□ -0.67
VTI1BP3-201ENST00000550220 CCDC173Q0VFZ6 552 aa10.89□□□□□ -0.67
VTI1BP3-201ENST00000550220 PAFAH1B3Q15102 231 aaKnown RBP10.89□□□□□ -0.67
VTI1BP3-201ENST00000550220 SLC18A3Q16572 532 aa10.89□□□□□ -0.67
VTI1BP3-201ENST00000550220 IFI16Q16666 785 aaKnown RBP10.89□□□□□ -0.67
VTI1BP3-201ENST00000550220 CLPPQ16740 277 aaPredicted RBP10.89□□□□□ -0.67
VTI1BP3-201ENST00000550220 PERM1Q5SV97 790 aa10.89□□□□□ -0.67
VTI1BP3-201ENST00000550220 SPACA3Q8IXA5 215 aa10.89□□□□□ -0.67
VTI1BP3-201ENST00000550220 PLA2G15Q8NCC3 412 aa10.89□□□□□ -0.67
VTI1BP3-201ENST00000550220 FAM46DQ8NEK8 389 aa10.89□□□□□ -0.67
VTI1BP3-201ENST00000550220 GPR156Q8NFN8 814 aa10.89□□□□□ -0.67
VTI1BP3-201ENST00000550220 KIAA1524Q8TCG1 905 aa10.89□□□□□ -0.67
VTI1BP3-201ENST00000550220 KCNE4Q8WWG9 221 aa10.89□□□□□ -0.67
VTI1BP3-201ENST00000550220 ATXN7L3BQ96GX2 97 aa10.89□□□□□ -0.67
VTI1BP3-201ENST00000550220 LIN37Q96GY3 246 aaPredicted RBP10.89□□□□□ -0.67
VTI1BP3-201ENST00000550220 TSGA13Q96PP4 275 aa10.89□□□□□ -0.67
VTI1BP3-201ENST00000550220 GFM1Q96RP9 751 aaKnown RBP10.89□□□□□ -0.67
VTI1BP3-201ENST00000550220 MCCC1Q96RQ3 725 aaPredicted RBP10.89□□□□□ -0.67
VTI1BP3-201ENST00000550220 TEX101Q9BY14 249 aa10.89□□□□□ -0.67
VTI1BP3-201ENST00000550220 GSDMCQ9BYG8 508 aa10.89□□□□□ -0.67
VTI1BP3-201ENST00000550220 DEF6Q9H4E7 631 aa10.89□□□□□ -0.67
VTI1BP3-201ENST00000550220 CAAP1Q9H8G2 361 aa10.89□□□□□ -0.67
VTI1BP3-201ENST00000550220 ETNK2Q9NVF9 386 aa10.89□□□□□ -0.67
VTI1BP3-201ENST00000550220 TRNAU1APQ9NX07 287 aaKnown RBP10.89□□□□□ -0.67
VTI1BP3-201ENST00000550220 SIRPGQ9P1W8 387 aa10.89□□□□□ -0.67
VTI1BP3-201ENST00000550220 RPL26L1Q9UNX3 145 aaKnown RBP10.89□□□□□ -0.67
VTI1BP3-201ENST00000550220 SATB2Q9UPW6 733 aa10.89□□□□□ -0.67
VTI1BP3-201ENST00000550220 ENTPD2Q9Y5L3 495 aa10.89□□□□□ -0.67
VTI1BP3-201ENST00000550220 ADAMTS20P59510 1910 aa10.89□□□□□ -0.67
VTI1BP3-201ENST00000550220 TMEM202A6NGA9 273 aa10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 CAPN8A6NHC0 703 aa10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 A8MX80 341 aa10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 NUDT21O43809 227 aaKnown RBP10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 MAN1A1P33908 653 aa10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 ARHGAP25P42331 645 aa10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 ARSEP51690 589 aa10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 EPHB1P54762 984 aa10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 TMPRSS3P57727 454 aa10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 GALNT2Q10471 571 aa10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 ILF3Q12906 894 aaKnown RBP eCLIP10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 DPYSL3Q14195 570 aa10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 CNGA3Q16281 694 aa10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 ANKRD20A8PQ5CZ79 823 aa10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 C3orf38Q5JPI3 329 aa10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 SPECC1LQ69YQ0 1117 aa10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 TXNRD3NBQ6F5E7 133 aa10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 ALG1LQ6GMV1 187 aa10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 TP53INP2Q8IXH6 220 aa10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 PGBD5Q8N414 524 aa10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 KYQ8NBH2 561 aa10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 OR1E3Q8WZA6 343 aa10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 CCDC74AQ96AQ1 378 aa10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 DTD2Q96FN9 168 aa10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 PDXPQ96GD0 296 aa10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 BTBD6Q96KE9 485 aa10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 ZNF830Q96NB3 372 aaPredicted RBP10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 FCRL3Q96P31 734 aaPredicted RBP10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 SEMA3CQ99985 751 aa10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 LRRN3Q9H3W5 708 aa10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 DPEP2Q9H4A9 486 aa10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 CYP4F12Q9HCS2 524 aa10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 FGF22Q9HCT0 170 aa10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 ASCL3Q9NQ33 180 aa10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 MOSPD1Q9UJG1 213 aa10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 RAI2Q9Y5P3 530 aa10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 TP53BP1Q12888 1972 aaPredicted RBP10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 TDRD6O60522 2096 aaKnown RBP10.88□□□□□ -0.67
VTI1BP3-201ENST00000550220 PRSS38A1L453 326 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 ZNF487B1APH4 448 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 PLD2O14939 933 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 AKR1B10O60218 316 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 RPLP0P05388 317 aaKnown RBP10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 CELA2BP08218 269 aaPredicted RBP10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 ITGA2BP08514 1039 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 TMEM253P0C7T8 217 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 CCNB1P14635 433 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 GM2AP17900 193 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 CCKBRP32239 447 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 ETV3P41162 512 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 INHBCP55103 352 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 MAXP61244 160 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 CDK3Q00526 305 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 TRAF2Q12933 501 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 BIRC2Q13490 618 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 ZSCAN23Q3MJ62 389 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 C14orf28Q4W4Y0 310 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 CERCAMQ5T4B2 595 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 ZFYVE27Q5T4F4 411 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 DENND2CQ68D51 928 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 RAET1GQ6H3X3 334 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 CRTC1Q6UUV9 634 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 ZNF765Q7L2R6 523 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 TECPR1Q7Z6L1 1165 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 HEATR4Q86WZ0 1026 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 VSIG1Q86XK7 387 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 NRSN1Q8IZ57 195 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 GPBAR1Q8TDU6 330 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 PIH1D2Q8WWB5 315 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 MAML1Q92585 1016 aa10.87□□□□□ -0.67
VTI1BP3-201ENST00000550220 FAF2Q96CS3 445 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms