RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 RBM20Q5T481 1227 aaKnown RBP15.02■□□□□ -0
CUX1-214ENST00000550008 WLSQ5T9L3 541 aa15.02■□□□□ -0
CUX1-214ENST00000550008 C6orf89Q6UWU4 347 aa15.02■□□□□ -0
CUX1-214ENST00000550008 PLD6Q8N2A8 252 aaKnown RBP15.02■□□□□ -0
CUX1-214ENST00000550008 HJURPQ8NCD3 748 aaPredicted RBP15.02■□□□□ -0
CUX1-214ENST00000550008 SSU72Q9NP77 194 aaKnown RBP15.02■□□□□ -0
CUX1-214ENST00000550008 CPQQ9Y646 472 aa15.02■□□□□ -0
CUX1-214ENST00000550008 TRAV19A0A0A6YYK7 116 aa15.02□□□□□ -0.01
CUX1-214ENST00000550008 NEDD8-MDP1E9PL57 170 aa15.02□□□□□ -0.01
CUX1-214ENST00000550008 TBC1D4O60343 1298 aa15.02□□□□□ -0.01
CUX1-214ENST00000550008 SIX3O95343 332 aaPredicted RBP15.02□□□□□ -0.01
CUX1-214ENST00000550008 YBEYP58557 167 aaPredicted RBP15.02□□□□□ -0.01
CUX1-214ENST00000550008 PWP1Q13610 501 aa15.02□□□□□ -0.01
CUX1-214ENST00000550008 PARP15Q460N3 678 aa15.02□□□□□ -0.01
CUX1-214ENST00000550008 SLC9B1Q4ZJI4 515 aa15.02□□□□□ -0.01
CUX1-214ENST00000550008 C16orf87Q6PH81 154 aa15.02□□□□□ -0.01
CUX1-214ENST00000550008 RD3Q7Z3Z2 195 aa15.02□□□□□ -0.01
CUX1-214ENST00000550008 DHDDSQ86SQ9 333 aa15.02□□□□□ -0.01
CUX1-214ENST00000550008 CLYBLQ8N0X4 340 aa15.02□□□□□ -0.01
CUX1-214ENST00000550008 MCOLN3Q8TDD5 553 aa15.02□□□□□ -0.01
CUX1-214ENST00000550008 ATP13A3Q9H7F0 1226 aa15.02□□□□□ -0.01
CUX1-214ENST00000550008 TYROBPO43914 113 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 RPP40O75818 363 aaKnown RBP15.01□□□□□ -0.01
CUX1-214ENST00000550008 LRATO95237 230 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 TGDSO95455 350 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 OR56A5P0C7T3 313 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 TSNQ15631 228 aaKnown RBP15.01□□□□□ -0.01
CUX1-214ENST00000550008 MARCH8Q5T0T0 291 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 RRM2BQ7LG56 351 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 NPAS4Q8IUM7 802 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 NMUR1Q9HB89 426 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 AP4S1Q9Y587 144 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 MAP1BP46821 2468 aaKnown RBP15.01□□□□□ -0.01
CUX1-214ENST00000550008 MGRN1O60291 552 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 PKMP14618 531 aaKnown RBP15.01□□□□□ -0.01
CUX1-214ENST00000550008 POLR2EP19388 210 aaKnown RBP15.01□□□□□ -0.01
CUX1-214ENST00000550008 ALDH9A1P49189 494 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 SNRPD1P62314 119 aaKnown RBP15.01□□□□□ -0.01
CUX1-214ENST00000550008 TRIP4Q15650 581 aaPredicted RBP15.01□□□□□ -0.01
CUX1-214ENST00000550008 AP5B1Q2VPB7 878 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 USP45Q70EL2 814 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 ELMO1Q92556 727 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 TXLNGYQ9BZA5 131 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 SLC45A1Q9Y2W3 748 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 SLC38A8A6NNN8 435 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 ZBTB14O43829 449 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 SNAP91O60641 907 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 CHRNA1P02708 482 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 NEK3P51956 506 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 IRF8Q02556 426 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 CCDC15Q0P6D6 951 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 ALFQ53S48 1182 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 ACSBG2Q5FVE4 666 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 PPP1R15BQ5SWA1 713 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 GPRIN3Q6ZVF9 776 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 PIM3Q86V86 326 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 RP9Q8TA86 221 aaKnown RBP15.01□□□□□ -0.01
CUX1-214ENST00000550008 OR52B2Q96RD2 323 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 CCDC162PA2VCL2 907 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 CCL16O15467 120 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 TM7SF2O76062 418 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 EOMESO95936 686 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 TLE2Q04725 743 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 ABRQ12979 859 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 ZNF621Q6ZSS3 439 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 CPNE9Q8IYJ1 553 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 DSELQ8IZU8 1212 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 DPF3Q92784 378 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 DACT3Q96B18 629 aaPredicted RBP15.01□□□□□ -0.01
CUX1-214ENST00000550008 ARHGEF3Q9NR81 526 aa15.01□□□□□ -0.01
CUX1-214ENST00000550008 TBC1D3BA6NDS4 549 aa15□□□□□ -0.01
CUX1-214ENST00000550008 RAP1GDS1P52306 607 aa15□□□□□ -0.01
CUX1-214ENST00000550008 CYP4F8P98187 520 aa15□□□□□ -0.01
CUX1-214ENST00000550008 CAMK2GQ13555 558 aaPredicted RBP15□□□□□ -0.01
CUX1-214ENST00000550008 KRT72Q14CN4 511 aa15□□□□□ -0.01
CUX1-214ENST00000550008 ZIK1Q3SY52 487 aaPredicted RBP15□□□□□ -0.01
CUX1-214ENST00000550008 FIBCD1Q8N539 461 aa15□□□□□ -0.01
CUX1-214ENST00000550008 MAGED4Q96JG8 741 aa15□□□□□ -0.01
CUX1-214ENST00000550008 HAPLN3Q96S86 360 aa15□□□□□ -0.01
CUX1-214ENST00000550008 EIF2B3Q9NR50 452 aaKnown RBP15□□□□□ -0.01
CUX1-214ENST00000550008 SRRDQ9UH36 339 aa15□□□□□ -0.01
CUX1-214ENST00000550008 PGAP2Q9UHJ9 254 aa15□□□□□ -0.01
CUX1-214ENST00000550008 MRPS23Q9Y3D9 190 aaKnown RBP15□□□□□ -0.01
CUX1-214ENST00000550008 ATXN2Q99700 1313 aaKnown RBP15□□□□□ -0.01
CUX1-214ENST00000550008 CAPN8A6NHC0 703 aa15□□□□□ -0.01
CUX1-214ENST00000550008 SYN3O14994 580 aa15□□□□□ -0.01
CUX1-214ENST00000550008 HOXB8P17481 243 aaPredicted RBP15□□□□□ -0.01
CUX1-214ENST00000550008 DGKAP23743 735 aa15□□□□□ -0.01
CUX1-214ENST00000550008 HIST2H2ACQ16777 129 aaPredicted RBP15□□□□□ -0.01
CUX1-214ENST00000550008 HIST2H2AA3Q6FI13 130 aa15□□□□□ -0.01
CUX1-214ENST00000550008 FBXL19Q6PCT2 694 aa15□□□□□ -0.01
CUX1-214ENST00000550008 STK40Q8N2I9 435 aa15□□□□□ -0.01
CUX1-214ENST00000550008 NPWQ8N729 165 aa15□□□□□ -0.01
CUX1-214ENST00000550008 MS4A4AQ96JQ5 239 aa15□□□□□ -0.01
CUX1-214ENST00000550008 FCRL5Q96RD9 977 aa15□□□□□ -0.01
CUX1-214ENST00000550008 CD84Q9UIB8 345 aa15□□□□□ -0.01
CUX1-214ENST00000550008 PDZK1P1A8MUH7 402 aa15□□□□□ -0.01
CUX1-214ENST00000550008 PRMT5O14744 637 aaPredicted RBP15□□□□□ -0.01
CUX1-214ENST00000550008 SCNN1AP37088 669 aa15□□□□□ -0.01
CUX1-214ENST00000550008 RFX3P48380 749 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms