RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 TYRO3Q06418 890 aa12.85□□□□□ -0.35
USP28-212ENST00000544750 NCAPHQ15003 741 aa12.85□□□□□ -0.35
USP28-212ENST00000544750 PARP15Q460N3 678 aa12.85□□□□□ -0.35
USP28-212ENST00000544750 VWA3BQ502W6 1294 aa12.85□□□□□ -0.35
USP28-212ENST00000544750 NAA35Q5VZE5 725 aa12.85□□□□□ -0.35
USP28-212ENST00000544750 CAVIN1Q6NZI2 390 aaKnown RBP12.85□□□□□ -0.35
USP28-212ENST00000544750 PNCKQ6P2M8 343 aa12.85□□□□□ -0.35
USP28-212ENST00000544750 SASS6Q6UVJ0 657 aa12.85□□□□□ -0.35
USP28-212ENST00000544750 ZNF354CQ86Y25 554 aa12.85□□□□□ -0.35
USP28-212ENST00000544750 NAGSQ8N159 534 aa12.85□□□□□ -0.35
USP28-212ENST00000544750 MSANTD4Q8NCY6 345 aa12.85□□□□□ -0.35
USP28-212ENST00000544750 AGBL5Q8NDL9 886 aa12.85□□□□□ -0.35
USP28-212ENST00000544750 ZDHHC1Q8WTX9 485 aa12.85□□□□□ -0.35
USP28-212ENST00000544750 PATE1Q8WXA2 126 aa12.85□□□□□ -0.35
USP28-212ENST00000544750 NSMCE3Q96MG7 304 aa12.85□□□□□ -0.35
USP28-212ENST00000544750 TUBGCP5Q96RT8 1024 aa12.85□□□□□ -0.35
USP28-212ENST00000544750 NCAPGQ9BPX3 1015 aa12.85□□□□□ -0.35
USP28-212ENST00000544750 ZNF71Q9NQZ8 489 aaPredicted RBP12.85□□□□□ -0.35
USP28-212ENST00000544750 TRNAU1APQ9NX07 287 aaKnown RBP12.85□□□□□ -0.35
USP28-212ENST00000544750 OCIAD1Q9NX40 245 aa12.85□□□□□ -0.35
USP28-212ENST00000544750 TAAR2Q9P1P5 351 aa12.85□□□□□ -0.35
USP28-212ENST00000544750 PDP2Q9P2J9 529 aa12.85□□□□□ -0.35
USP28-212ENST00000544750 PLAAQ9Y263 795 aa12.85□□□□□ -0.35
USP28-212ENST00000544750 SHANK1Q9Y566 2161 aa12.84□□□□□ -0.35
USP28-212ENST00000544750 RP1L1Q8IWN7 2480 aaPredicted RBP12.84□□□□□ -0.35
USP28-212ENST00000544750 IGHV1OR21-1A0A087WYE8 117 aa12.84□□□□□ -0.35
USP28-212ENST00000544750 BLACEA4D250 179 aa12.84□□□□□ -0.35
USP28-212ENST00000544750 RHPN2P1A8MT19 583 aa12.84□□□□□ -0.35
USP28-212ENST00000544750 CEACAM5P06731 702 aa12.84□□□□□ -0.35
USP28-212ENST00000544750 AK4P27144 223 aaPredicted RBP12.84□□□□□ -0.35
USP28-212ENST00000544750 EPHB2P29323 1055 aa12.84□□□□□ -0.35
USP28-212ENST00000544750 PTP4A2Q12974 167 aa12.84□□□□□ -0.35
USP28-212ENST00000544750 TSR1Q2NL82 804 aaKnown RBP12.84□□□□□ -0.35
USP28-212ENST00000544750 C4orf17Q53FE4 359 aa12.84□□□□□ -0.35
USP28-212ENST00000544750 KLHDC7AQ5VTJ3 777 aa12.84□□□□□ -0.35
USP28-212ENST00000544750 DPPA4Q7L190 304 aa12.84□□□□□ -0.35
USP28-212ENST00000544750 FAM172AQ8WUF8 416 aa12.84□□□□□ -0.35
USP28-212ENST00000544750 PTCD2Q8WV60 388 aaKnown RBP12.84□□□□□ -0.35
USP28-212ENST00000544750 ABHD17AQ96GS6 310 aa12.84□□□□□ -0.35
USP28-212ENST00000544750 FRMD8Q9BZ67 464 aaPredicted RBP12.84□□□□□ -0.35
USP28-212ENST00000544750 ASPSCR1Q9BZE9 553 aa12.84□□□□□ -0.35
USP28-212ENST00000544750 LRRC19Q9H756 370 aa12.84□□□□□ -0.35
USP28-212ENST00000544750 WDR26Q9H7D7 661 aa12.84□□□□□ -0.35
USP28-212ENST00000544750 FANCLQ9NW38 375 aa12.84□□□□□ -0.35
USP28-212ENST00000544750 TAB2Q9NYJ8 693 aa12.84□□□□□ -0.35
USP28-212ENST00000544750 TMEM9Q9P0T7 183 aa12.84□□□□□ -0.35
USP28-212ENST00000544750 UBA2Q9UBT2 640 aaPredicted RBP12.84□□□□□ -0.35
USP28-212ENST00000544750 CREBBPQ92793 2442 aa12.83□□□□□ -0.35
USP28-212ENST00000544750 LOC101059948A0A1B0GTJ6 334 aa12.83□□□□□ -0.36
USP28-212ENST00000544750 J3KR12 359 aa12.83□□□□□ -0.36
USP28-212ENST00000544750 TRAFD1O14545 582 aaPredicted RBP12.83□□□□□ -0.36
USP28-212ENST00000544750 PRAMEF11O60813 436 aa12.83□□□□□ -0.36
USP28-212ENST00000544750 ELFN1P0C7U0 828 aa12.83□□□□□ -0.36
USP28-212ENST00000544750 MYCLP1P12525 358 aaPredicted RBP12.83□□□□□ -0.36
USP28-212ENST00000544750 OAS2P29728 719 aaKnown RBP12.83□□□□□ -0.36
USP28-212ENST00000544750 GSCP56915 257 aaPredicted RBP12.83□□□□□ -0.36
USP28-212ENST00000544750 MYL5Q02045 173 aa12.83□□□□□ -0.36
USP28-212ENST00000544750 CDC20Q12834 499 aa12.83□□□□□ -0.36
USP28-212ENST00000544750 RAPGEF1Q13905 1077 aa12.83□□□□□ -0.36
USP28-212ENST00000544750 KRT31Q15323 416 aa12.83□□□□□ -0.36
USP28-212ENST00000544750 CRTC2Q53ET0 693 aaPredicted RBP12.83□□□□□ -0.36
USP28-212ENST00000544750 NKAIN2Q5VXU1 208 aa12.83□□□□□ -0.36
USP28-212ENST00000544750 TIPARPQ7Z3E1 657 aaKnown RBP12.83□□□□□ -0.36
USP28-212ENST00000544750 SLFN11Q7Z7L1 901 aa12.83□□□□□ -0.36
USP28-212ENST00000544750 PHLDB2Q86SQ0 1253 aa12.83□□□□□ -0.36
USP28-212ENST00000544750 SRLQ86TD4 932 aa12.83□□□□□ -0.36
USP28-212ENST00000544750 CBARPQ8N350 705 aaPredicted RBP12.83□□□□□ -0.36
USP28-212ENST00000544750 CCDC112Q8NEF3 446 aa12.83□□□□□ -0.36
USP28-212ENST00000544750 SLC20A1Q8WUM9 679 aa12.83□□□□□ -0.36
USP28-212ENST00000544750 SPOCK2Q92563 424 aa12.83□□□□□ -0.36
USP28-212ENST00000544750 RTP4Q96DX8 246 aa12.83□□□□□ -0.36
USP28-212ENST00000544750 COQ10AQ96MF6 247 aa12.83□□□□□ -0.36
USP28-212ENST00000544750 TEX101Q9BY14 249 aa12.83□□□□□ -0.36
USP28-212ENST00000544750 GSDMCQ9BYG8 508 aa12.83□□□□□ -0.36
USP28-212ENST00000544750 CARS2Q9HA77 564 aaKnown RBP12.83□□□□□ -0.36
USP28-212ENST00000544750 SLC39A1Q9NY26 324 aa12.83□□□□□ -0.36
USP28-212ENST00000544750 MOSPD1Q9UJG1 213 aa12.83□□□□□ -0.36
USP28-212ENST00000544750 NOCTQ9UK39 431 aaKnown RBP12.83□□□□□ -0.36
USP28-212ENST00000544750 ESPL1Q14674 2120 aa12.83□□□□□ -0.36
USP28-212ENST00000544750 TNRC6AQ8NDV7 1962 aaKnown RBP12.83□□□□□ -0.36
USP28-212ENST00000544750 F8VZ95 297 aa12.82□□□□□ -0.36
USP28-212ENST00000544750 PDE2AO00408 941 aaPredicted RBP12.82□□□□□ -0.36
USP28-212ENST00000544750 ZW10O43264 779 aa12.82□□□□□ -0.36
USP28-212ENST00000544750 UCHL3P15374 230 aa12.82□□□□□ -0.36
USP28-212ENST00000544750 CHRNB2P17787 502 aa12.82□□□□□ -0.36
USP28-212ENST00000544750 MPSTP25325 297 aa12.82□□□□□ -0.36
USP28-212ENST00000544750 CSTF2P33240 577 aaKnown RBP eCLIP12.82□□□□□ -0.36
USP28-212ENST00000544750 RFC1P35251 1148 aaPredicted RBP12.82□□□□□ -0.36
USP28-212ENST00000544750 RAB15P59190 212 aa12.82□□□□□ -0.36
USP28-212ENST00000544750 FMO1Q01740 532 aa12.82□□□□□ -0.36
USP28-212ENST00000544750 ILF3Q12906 894 aaKnown RBP eCLIP12.82□□□□□ -0.36
USP28-212ENST00000544750 DCAF12Q5T6F0 453 aa12.82□□□□□ -0.36
USP28-212ENST00000544750 ANKS6Q68DC2 871 aa12.82□□□□□ -0.36
USP28-212ENST00000544750 TMEM71Q6P5X7 295 aa12.82□□□□□ -0.36
USP28-212ENST00000544750 WDR59Q6PJI9 974 aa12.82□□□□□ -0.36
USP28-212ENST00000544750 APTXQ7Z2E3 356 aaKnown RBP12.82□□□□□ -0.36
USP28-212ENST00000544750 ZNF677Q86XU0 584 aa12.82□□□□□ -0.36
USP28-212ENST00000544750 TSEN2Q8NCE0 465 aaKnown RBP12.82□□□□□ -0.36
USP28-212ENST00000544750 TEFMQ96QE5 360 aaKnown RBP12.82□□□□□ -0.36
USP28-212ENST00000544750 DPYSL5Q9BPU6 564 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms