RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 SLC39A7Q92504 469 aa13.14□□□□□ -0.31
RTN3-212ENST00000543123 TMEM159Q96B96 161 aa13.14□□□□□ -0.31
RTN3-212ENST00000543123 COQ10AQ96MF6 247 aa13.14□□□□□ -0.31
RTN3-212ENST00000543123 FUCA2Q9BTY2 467 aa13.14□□□□□ -0.31
RTN3-212ENST00000543123 POLR1EQ9GZS1 481 aaKnown RBP13.14□□□□□ -0.31
RTN3-212ENST00000543123 NOD2Q9HC29 1040 aa13.14□□□□□ -0.31
RTN3-212ENST00000543123 CBX8Q9HC52 389 aa13.14□□□□□ -0.31
RTN3-212ENST00000543123 EPB41L5Q9HCM4 733 aa13.14□□□□□ -0.31
RTN3-212ENST00000543123 CYP4F12Q9HCS2 524 aa13.14□□□□□ -0.31
RTN3-212ENST00000543123 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.14□□□□□ -0.31
RTN3-212ENST00000543123 MOSPD1Q9UJG1 213 aa13.14□□□□□ -0.31
RTN3-212ENST00000543123 APPL1Q9UKG1 709 aa13.14□□□□□ -0.31
RTN3-212ENST00000543123 DNPEPQ9ULA0 475 aa13.14□□□□□ -0.31
RTN3-212ENST00000543123 CAPN11Q9UMQ6 739 aa13.14□□□□□ -0.31
RTN3-212ENST00000543123 PCDHGC4Q9Y5F7 938 aa13.14□□□□□ -0.31
RTN3-212ENST00000543123 MGAQ8IWI9 3026 aa13.14□□□□□ -0.31
RTN3-212ENST00000543123 ATMQ13315 3056 aa13.13□□□□□ -0.31
RTN3-212ENST00000543123 GCN1Q92616 2671 aaKnown RBP13.13□□□□□ -0.31
RTN3-212ENST00000543123 SYCE3A1L190 88 aa13.13□□□□□ -0.31
RTN3-212ENST00000543123 A8MX80 341 aa13.13□□□□□ -0.31
RTN3-212ENST00000543123 CDRT15L2A8MXV6 281 aa13.13□□□□□ -0.31
RTN3-212ENST00000543123 B4DGG1 531 aa13.13□□□□□ -0.31
RTN3-212ENST00000543123 ERVH48-1M5A8F1 160 aa13.13□□□□□ -0.31
RTN3-212ENST00000543123 PLD2O14939 933 aa13.13□□□□□ -0.31
RTN3-212ENST00000543123 HEXIM1O94992 359 aaKnown RBP13.13□□□□□ -0.31
RTN3-212ENST00000543123 TNFSF15O95150 251 aa13.13□□□□□ -0.31
RTN3-212ENST00000543123 PEX11BO96011 259 aa13.13□□□□□ -0.31
RTN3-212ENST00000543123 TCF4P15884 667 aa13.13□□□□□ -0.31
RTN3-212ENST00000543123 PTMSP20962 102 aa13.13□□□□□ -0.31
RTN3-212ENST00000543123 CES1P23141 567 aa13.13□□□□□ -0.31
RTN3-212ENST00000543123 TEAD1P28347 426 aa13.13□□□□□ -0.31
RTN3-212ENST00000543123 CCKBRP32239 447 aa13.13□□□□□ -0.31
RTN3-212ENST00000543123 PDX1P52945 283 aa13.13□□□□□ -0.31
RTN3-212ENST00000543123 SLC25A11Q02978 314 aaKnown RBP13.13□□□□□ -0.31
RTN3-212ENST00000543123 ILF3Q12906 894 aaKnown RBP eCLIP13.13□□□□□ -0.31
RTN3-212ENST00000543123 C14orf28Q4W4Y0 310 aa13.13□□□□□ -0.31
RTN3-212ENST00000543123 TIGD7Q6NT04 549 aaPredicted RBP13.13□□□□□ -0.31
RTN3-212ENST00000543123 ALKBH5Q6P6C2 394 aaKnown RBP13.13□□□□□ -0.31
RTN3-212ENST00000543123 OGFOD3Q6PK18 319 aa13.13□□□□□ -0.31
RTN3-212ENST00000543123 CLEC14AQ86T13 490 aa13.13□□□□□ -0.31
RTN3-212ENST00000543123 LUZP1Q86V48 1076 aa13.13□□□□□ -0.31
RTN3-212ENST00000543123 MAP7D3Q8IWC1 876 aa13.13□□□□□ -0.31
RTN3-212ENST00000543123 TP53INP2Q8IXH6 220 aa13.13□□□□□ -0.31
RTN3-212ENST00000543123 DTD2Q96FN9 168 aa13.13□□□□□ -0.31
RTN3-212ENST00000543123 SCRN2Q96FV2 425 aa13.13□□□□□ -0.31
RTN3-212ENST00000543123 MCCC1Q96RQ3 725 aaPredicted RBP13.13□□□□□ -0.31
RTN3-212ENST00000543123 GSDMCQ9BYG8 508 aa13.13□□□□□ -0.31
RTN3-212ENST00000543123 LRRN3Q9H3W5 708 aa13.13□□□□□ -0.31
RTN3-212ENST00000543123 DPEP2Q9H4A9 486 aa13.13□□□□□ -0.31
RTN3-212ENST00000543123 CARS2Q9HA77 564 aaKnown RBP13.13□□□□□ -0.31
RTN3-212ENST00000543123 ETNK2Q9NVF9 386 aa13.13□□□□□ -0.31
RTN3-212ENST00000543123 AMACRQ9UHK6 382 aa13.13□□□□□ -0.31
RTN3-212ENST00000543123 COL27A1Q8IZC6 1860 aaPredicted RBP13.12□□□□□ -0.31
RTN3-212ENST00000543123 GOLGA6CA6NDK9 693 aa13.12□□□□□ -0.31
RTN3-212ENST00000543123 GOLGA6BA6NDN3 693 aa13.12□□□□□ -0.31
RTN3-212ENST00000543123 NUDT21O43809 227 aaKnown RBP13.12□□□□□ -0.31
RTN3-212ENST00000543123 PGLSO95336 258 aa13.12□□□□□ -0.31
RTN3-212ENST00000543123 PYGLP06737 847 aa13.12□□□□□ -0.31
RTN3-212ENST00000543123 JMJD7P0C870 316 aa13.12□□□□□ -0.31
RTN3-212ENST00000543123 GOLGA6DP0CG33 693 aa13.12□□□□□ -0.31
RTN3-212ENST00000543123 PBX1P40424 430 aa13.12□□□□□ -0.31
RTN3-212ENST00000543123 CCL7P80098 99 aa13.12□□□□□ -0.31
RTN3-212ENST00000543123 SKOR1P84550 965 aa13.12□□□□□ -0.31
RTN3-212ENST00000543123 ITKQ08881 620 aa13.12□□□□□ -0.31
RTN3-212ENST00000543123 VAC14Q08AM6 782 aa13.12□□□□□ -0.31
RTN3-212ENST00000543123 TRAF2Q12933 501 aa13.12□□□□□ -0.31
RTN3-212ENST00000543123 BIRC2Q13490 618 aa13.12□□□□□ -0.31
RTN3-212ENST00000543123 DENND2CQ68D51 928 aa13.12□□□□□ -0.31
RTN3-212ENST00000543123 SPECC1LQ69YQ0 1117 aa13.12□□□□□ -0.31
RTN3-212ENST00000543123 RAET1GQ6H3X3 334 aa13.12□□□□□ -0.31
RTN3-212ENST00000543123 RAB11FIP2Q7L804 512 aa13.12□□□□□ -0.31
RTN3-212ENST00000543123 HEATR4Q86WZ0 1026 aa13.12□□□□□ -0.31
RTN3-212ENST00000543123 PGBD5Q8N414 524 aa13.12□□□□□ -0.31
RTN3-212ENST00000543123 FBXO39Q8N4B4 442 aa13.12□□□□□ -0.31
RTN3-212ENST00000543123 TEX26Q8N6G2 289 aa13.12□□□□□ -0.31
RTN3-212ENST00000543123 ZNF564Q8TBZ8 553 aaPredicted RBP13.12□□□□□ -0.31
RTN3-212ENST00000543123 CPLX3Q8WVH0 158 aa13.12□□□□□ -0.31
RTN3-212ENST00000543123 CTNNBL1Q8WYA6 563 aaPredicted RBP13.12□□□□□ -0.31
RTN3-212ENST00000543123 FATE1Q969F0 183 aa13.12□□□□□ -0.31
RTN3-212ENST00000543123 WBP1Q96G27 269 aa13.12□□□□□ -0.31
RTN3-212ENST00000543123 ZNF670Q9BS34 389 aa13.12□□□□□ -0.31
RTN3-212ENST00000543123 TEX101Q9BY14 249 aa13.12□□□□□ -0.31
RTN3-212ENST00000543123 TMEM168Q9H0V1 697 aa13.12□□□□□ -0.31
RTN3-212ENST00000543123 NT5MQ9NPB1 228 aa13.12□□□□□ -0.31
RTN3-212ENST00000543123 MRPL40Q9NQ50 206 aaKnown RBP13.12□□□□□ -0.31
RTN3-212ENST00000543123 TRNAU1APQ9NX07 287 aaKnown RBP13.12□□□□□ -0.31
RTN3-212ENST00000543123 GOLGA6AQ9NYA3 693 aa13.12□□□□□ -0.31
RTN3-212ENST00000543123 UVRAGQ9P2Y5 699 aa13.12□□□□□ -0.31
RTN3-212ENST00000543123 PCDHGA7Q9Y5G6 932 aa13.12□□□□□ -0.31
RTN3-212ENST00000543123 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.12□□□□□ -0.313e-6■■■□□ 16.3
RTN3-212ENST00000543123 SHROOM3Q8TF72 1996 aa13.11□□□□□ -0.31
RTN3-212ENST00000543123 A0A087X0T9 212 aa13.11□□□□□ -0.31
RTN3-212ENST00000543123 A0A1W2PNU3 283 aaPredicted RBP13.11□□□□□ -0.31
RTN3-212ENST00000543123 NPIPB15A6NHN6 443 aaPredicted RBP13.11□□□□□ -0.31
RTN3-212ENST00000543123 KRT7P08729 469 aa13.11□□□□□ -0.31
RTN3-212ENST00000543123 FAM228BP0C875 321 aa13.11□□□□□ -0.31
RTN3-212ENST00000543123 CCNB1P14635 433 aa13.11□□□□□ -0.31
RTN3-212ENST00000543123 ZNF30P17039 623 aa13.11□□□□□ -0.31
RTN3-212ENST00000543123 GM2AP17900 193 aa13.11□□□□□ -0.31
RTN3-212ENST00000543123 MX2P20592 715 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms