RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 FATE1Q969F0 183 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 GRAMD1AQ96CP6 724 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 HDAC11Q96DB2 347 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 SGF29Q96ES7 293 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 IFT43Q96FT9 208 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 BMFQ96LC9 184 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 ZNF599Q96NL3 588 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 TSGA13Q96PP4 275 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 CCDC3Q9BQI4 270 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 BRD8Q9H0E9 1235 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 TRMT1Q9NXH9 659 aaKnown RBP8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 DTLQ9NZJ0 730 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 PACSIN2Q9UNF0 486 aaPredicted RBP8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 SSUH2Q9Y2M2 353 aa8.77□□□□□ -1.01
CLSTN3-212ENST00000541770 EME2A4GXA9 379 aaPredicted RBP8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 J3KR12 359 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 K7ERQ8 282 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 RNF103O00237 685 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 TERTO14746 1132 aaKnown RBP8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 FPGTO14772 594 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 RAD51BO15315 384 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 EFSO43281 561 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 SMAD6O43541 496 aaKnown RBP8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 KIF5CO60282 957 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 CST8O60676 142 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 ZNF821O75541 412 aaPredicted RBP8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 TCEA3O75764 348 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 CSF2P04141 144 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 PRNPP04156 253 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 PYGMP11217 842 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 CCNCP24863 283 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 MSNP26038 577 aaKnown RBP8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 SLC5A2P31639 672 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 RECQLP46063 649 aaPredicted RBP8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 RPIAP49247 311 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 GBE1Q04446 702 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 SLC10A2Q12908 348 aaPredicted RBP8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 RPS6KA1Q15418 735 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 TIGD7Q6NT04 549 aaPredicted RBP8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 C22orf39Q6P5X5 142 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 KYAT3Q6YP21 454 aaKnown RBP8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 ARHGAP36Q6ZRI8 547 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 BBS12Q6ZW61 710 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 ERN2Q76MJ5 926 aaKnown RBP8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 CLEC14AQ86T13 490 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 RBFAQ8N0V3 343 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 ATPAF2Q8N5M1 289 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 NETO2Q8NC67 525 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 CHST14Q8NCH0 376 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 FAM174AQ8TBP5 190 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 GLMNQ92990 594 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 PPP1R16AQ96I34 528 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 TLR10Q9BXR5 811 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 SLC17A9Q9BYT1 436 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 OSBPL8Q9BZF1 889 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 CARD9Q9H257 536 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 TNKS2Q9H2K2 1166 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 SP110Q9HB58 689 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 NCKIPSDQ9NZQ3 722 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 SPASTQ9UBP0 616 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 GULP1Q9UBP9 304 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 UBA2Q9UBT2 640 aaPredicted RBP8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 IL36AQ9UHA7 158 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 KLF15Q9UIH9 416 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 ATXN7L1Q9ULK2 861 aaPredicted RBP8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 DOLKQ9UPQ8 538 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 JRKLQ9Y4A0 524 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 HS3ST3A1Q9Y663 406 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 CSNK1G3Q9Y6M4 447 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 RP1P56715 2156 aa8.76□□□□□ -1.01
CLSTN3-212ENST00000541770 SPTY2D1-AS1A0A0U1RR47 76 aa8.75□□□□□ -1.01
CLSTN3-212ENST00000541770 USP27XA6NNY8 438 aa8.75□□□□□ -1.01
CLSTN3-212ENST00000541770 APOC4-APOC2K7ER74 178 aa8.75□□□□□ -1.01
CLSTN3-212ENST00000541770 PLD2O14939 933 aa8.75□□□□□ -1.01
CLSTN3-212ENST00000541770 PPP1R12AO14974 1030 aaPredicted RBP8.75□□□□□ -1.01
CLSTN3-212ENST00000541770 MATN3O15232 486 aa8.75□□□□□ -1.01
CLSTN3-212ENST00000541770 SUV39H1O43463 412 aa8.75□□□□□ -1.01
CLSTN3-212ENST00000541770 LZTS3O60299 673 aaPredicted RBP8.75□□□□□ -1.01
CLSTN3-212ENST00000541770 TMCC1O94876 653 aa8.75□□□□□ -1.01
CLSTN3-212ENST00000541770 TJP3O95049 919 aa8.75□□□□□ -1.01
CLSTN3-212ENST00000541770 PEX11BO96011 259 aa8.75□□□□□ -1.01
CLSTN3-212ENST00000541770 GSRP00390 522 aa8.75□□□□□ -1.01
CLSTN3-212ENST00000541770 APOC2P02655 101 aa8.75□□□□□ -1.01
CLSTN3-212ENST00000541770 ANXA6P08133 673 aa8.75□□□□□ -1.01
CLSTN3-212ENST00000541770 ITGA2BP08514 1039 aa8.75□□□□□ -1.01
CLSTN3-212ENST00000541770 JMJD7P0C870 316 aa8.75□□□□□ -1.01
CLSTN3-212ENST00000541770 HGFP14210 728 aa8.75□□□□□ -1.01
CLSTN3-212ENST00000541770 NME1P15531 152 aaKnown RBP8.75□□□□□ -1.01
CLSTN3-212ENST00000541770 RABIFP47224 123 aa8.75□□□□□ -1.01
CLSTN3-212ENST00000541770 CSNK1DP48730 415 aa8.75□□□□□ -1.01
CLSTN3-212ENST00000541770 DNA2P51530 1060 aa8.75□□□□□ -1.01
CLSTN3-212ENST00000541770 RENBPP51606 427 aa8.75□□□□□ -1.01
CLSTN3-212ENST00000541770 NEK3P51956 506 aa8.75□□□□□ -1.01
CLSTN3-212ENST00000541770 THOP1P52888 689 aa8.75□□□□□ -1.01
CLSTN3-212ENST00000541770 RPS21P63220 83 aaKnown RBP8.75□□□□□ -1.01
CLSTN3-212ENST00000541770 ADCY2Q08462 1091 aa8.75□□□□□ -1.01
CLSTN3-212ENST00000541770 PPIDQ08752 370 aaKnown RBP8.75□□□□□ -1.01
CLSTN3-212ENST00000541770 NSUN2Q08J23 767 aaKnown RBP eCLIP8.75□□□□□ -1.01
CLSTN3-212ENST00000541770 SGCGQ13326 291 aa8.75□□□□□ -1.01
CLSTN3-212ENST00000541770 LBRQ14739 615 aaKnown RBP8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms