RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 PTDSS1P48651 473 aaKnown RBP13.79□□□□□ -0.2
RTN3-210ENST00000540798 Q6ZNB5 142 aa13.79□□□□□ -0.2
RTN3-210ENST00000540798 DNAJB7Q7Z6W7 309 aaPredicted RBP13.79□□□□□ -0.2
RTN3-210ENST00000540798 MYLK4Q86YV6 388 aaPredicted RBP13.79□□□□□ -0.2
RTN3-210ENST00000540798 MDGA1Q8NFP4 955 aa13.79□□□□□ -0.2
RTN3-210ENST00000540798 ZNF570Q96NI8 536 aa13.79□□□□□ -0.2
RTN3-210ENST00000540798 AARSD1Q9BTE6 412 aaKnown RBP13.79□□□□□ -0.2
RTN3-210ENST00000540798 NUF2Q9BZD4 464 aa13.79□□□□□ -0.2
RTN3-210ENST00000540798 SCUBE2Q9NQ36 999 aa13.79□□□□□ -0.2
RTN3-210ENST00000540798 CDYLQ9Y232 598 aa13.79□□□□□ -0.2
RTN3-210ENST00000540798 OR51B4Q9Y5P0 310 aa13.79□□□□□ -0.2
RTN3-210ENST00000540798 CD1DP15813 335 aa13.79□□□□□ -0.2
RTN3-210ENST00000540798 EPHA3P29320 983 aa13.79□□□□□ -0.2
RTN3-210ENST00000540798 SULT2A1Q06520 285 aa13.79□□□□□ -0.2
RTN3-210ENST00000540798 TWF1Q12792 350 aa13.79□□□□□ -0.2
RTN3-210ENST00000540798 VEPH1Q14D04 833 aa13.79□□□□□ -0.2
RTN3-210ENST00000540798 RCN1Q15293 331 aa13.79□□□□□ -0.2
RTN3-210ENST00000540798 GPR158Q5T848 1215 aa13.79□□□□□ -0.2
RTN3-210ENST00000540798 RNF219Q5W0B1 726 aaPredicted RBP13.79□□□□□ -0.2
RTN3-210ENST00000540798 RIPOR1Q6ZS17 1223 aa13.79□□□□□ -0.2
RTN3-210ENST00000540798 ACAD11Q709F0 780 aa13.79□□□□□ -0.2
RTN3-210ENST00000540798 PIM3Q86V86 326 aa13.79□□□□□ -0.2
RTN3-210ENST00000540798 GPR65Q8IYL9 337 aa13.79□□□□□ -0.2
RTN3-210ENST00000540798 MICAL1Q8TDZ2 1067 aa13.79□□□□□ -0.2
RTN3-210ENST00000540798 SGF29Q96ES7 293 aa13.79□□□□□ -0.2
RTN3-210ENST00000540798 DNMT3BQ9UBC3 853 aaKnown RBP13.79□□□□□ -0.2
RTN3-210ENST00000540798 MTF2Q9Y483 593 aaPredicted RBP13.79□□□□□ -0.2
RTN3-210ENST00000540798 ABHD14A-ACY1A0A1B0GW23 586 aa13.78□□□□□ -0.2
RTN3-210ENST00000540798 H0Y3Z8 333 aa13.78□□□□□ -0.2
RTN3-210ENST00000540798 BUD23O43709 281 aaKnown RBP13.78□□□□□ -0.2
RTN3-210ENST00000540798 PIRTP0C851 137 aa13.78□□□□□ -0.2
RTN3-210ENST00000540798 PIK3R1P27986 724 aa13.78□□□□□ -0.2
RTN3-210ENST00000540798 KCNC1P48547 511 aa13.78□□□□□ -0.2
RTN3-210ENST00000540798 SCNN1BP51168 640 aa13.78□□□□□ -0.2
RTN3-210ENST00000540798 MXRA7P84157 204 aa13.78□□□□□ -0.2
RTN3-210ENST00000540798 HERC3Q15034 1050 aa13.78□□□□□ -0.2
RTN3-210ENST00000540798 CMTR2Q8IYT2 770 aaKnown RBP13.78□□□□□ -0.2
RTN3-210ENST00000540798 CCNYL1Q8N7R7 359 aa13.78□□□□□ -0.2
RTN3-210ENST00000540798 PTERQ96BW5 349 aa13.78□□□□□ -0.2
RTN3-210ENST00000540798 TMEM169Q96HH4 297 aa13.78□□□□□ -0.2
RTN3-210ENST00000540798 GSTO2Q9H4Y5 243 aa13.78□□□□□ -0.2
RTN3-210ENST00000540798 IL21Q9HBE4 155 aa13.78□□□□□ -0.2
RTN3-210ENST00000540798 CRYL1Q9Y2S2 319 aa13.78□□□□□ -0.2
RTN3-210ENST00000540798 INSL5Q9Y5Q6 135 aa13.78□□□□□ -0.2
RTN3-210ENST00000540798 ZNF106Q9H2Y7 1883 aaKnown RBP13.78□□□□□ -0.2
RTN3-210ENST00000540798 GOLGA8QA0A0J9YX86 632 aa13.78□□□□□ -0.2
RTN3-210ENST00000540798 GOLGA8OA6NCC3 632 aa13.78□□□□□ -0.2
RTN3-210ENST00000540798 ANKRD33BA6NCL7 494 aa13.78□□□□□ -0.2
RTN3-210ENST00000540798 GOLGA8NF8WBI6 632 aa13.78□□□□□ -0.2
RTN3-210ENST00000540798 SDHDO14521 159 aa13.78□□□□□ -0.2
RTN3-210ENST00000540798 TSPAN3O60637 253 aa13.78□□□□□ -0.2
RTN3-210ENST00000540798 LILRB3O75022 631 aa13.78□□□□□ -0.2
RTN3-210ENST00000540798 MYCP01106 439 aaPredicted RBP13.78□□□□□ -0.2
RTN3-210ENST00000540798 IRF1P10914 325 aa13.78□□□□□ -0.2
RTN3-210ENST00000540798 IMPDH1P20839 514 aa13.78□□□□□ -0.2
RTN3-210ENST00000540798 PPARGP37231 505 aaPredicted RBP13.78□□□□□ -0.2
RTN3-210ENST00000540798 INO80DQ53TQ3 878 aaPredicted RBP13.78□□□□□ -0.2
RTN3-210ENST00000540798 RALGPS1Q5JS13 557 aa13.78□□□□□ -0.2
RTN3-210ENST00000540798 SH2D4BQ5SQS7 431 aa13.78□□□□□ -0.2
RTN3-210ENST00000540798 AFTPHQ6ULP2 937 aa13.78□□□□□ -0.2
RTN3-210ENST00000540798 PELI3Q8N2H9 469 aa13.78□□□□□ -0.2
RTN3-210ENST00000540798 FAR2Q96K12 515 aa13.78□□□□□ -0.2
RTN3-210ENST00000540798 LENG8Q96PV6 779 aaPredicted RBP13.78□□□□□ -0.2
RTN3-210ENST00000540798 ZNF334Q9HCZ1 680 aaPredicted RBP13.78□□□□□ -0.2
RTN3-210ENST00000540798 STOML1Q9UBI4 398 aa13.78□□□□□ -0.2
RTN3-210ENST00000540798 LHX3Q9UBR4 397 aa13.78□□□□□ -0.2
RTN3-210ENST00000540798 SSX2IPQ9Y2D8 614 aa13.78□□□□□ -0.2
RTN3-210ENST00000540798 MED16Q9Y2X0 877 aa13.78□□□□□ -0.2
RTN3-210ENST00000540798 TRPC5OSA6NMA1 111 aa13.77□□□□□ -0.2
RTN3-210ENST00000540798 CIB2O75838 187 aa13.77□□□□□ -0.2
RTN3-210ENST00000540798 PYGLP06737 847 aa13.77□□□□□ -0.2
RTN3-210ENST00000540798 ZNF37AP17032 561 aaPredicted RBP13.77□□□□□ -0.2
RTN3-210ENST00000540798 LAG3P18627 525 aa13.77□□□□□ -0.2
RTN3-210ENST00000540798 SLC34A1Q06495 639 aa13.77□□□□□ -0.2
RTN3-210ENST00000540798 SETMARQ53H47 684 aaPredicted RBP13.77□□□□□ -0.2
RTN3-210ENST00000540798 NCEH1Q6PIU2 408 aa13.77□□□□□ -0.2
RTN3-210ENST00000540798 CHSY3Q70JA7 882 aa13.77□□□□□ -0.2
RTN3-210ENST00000540798 RHEBL1Q8TAI7 183 aa13.77□□□□□ -0.2
RTN3-210ENST00000540798 KCNV2Q8TDN2 545 aa13.77□□□□□ -0.2
RTN3-210ENST00000540798 LPGAT1Q92604 370 aa13.77□□□□□ -0.2
RTN3-210ENST00000540798 ALG14Q96F25 216 aa13.77□□□□□ -0.2
RTN3-210ENST00000540798 TCF12Q99081 682 aa13.77□□□□□ -0.2
RTN3-210ENST00000540798 TRMOQ9BU70 441 aa13.77□□□□□ -0.2
RTN3-210ENST00000540798 ARHGAP26Q9UNA1 814 aa13.77□□□□□ -0.2
RTN3-210ENST00000540798 CARNS1A5YM72 827 aa13.77□□□□□ -0.21
RTN3-210ENST00000540798 TMEM233B4DJY2 109 aa13.77□□□□□ -0.21
RTN3-210ENST00000540798 CBX4O00257 560 aa13.77□□□□□ -0.21
RTN3-210ENST00000540798 TBX10O75333 385 aa13.77□□□□□ -0.21
RTN3-210ENST00000540798 PDHA1P08559 390 aa13.77□□□□□ -0.21
RTN3-210ENST00000540798 INHBCP55103 352 aa13.77□□□□□ -0.21
RTN3-210ENST00000540798 ZXDBP98169 803 aa13.77□□□□□ -0.21
RTN3-210ENST00000540798 C16orf59Q7L2K0 433 aa13.77□□□□□ -0.21
RTN3-210ENST00000540798 SDCCAG8Q86SQ7 713 aaPredicted RBP13.77□□□□□ -0.21
RTN3-210ENST00000540798 RNF135Q8IUD6 432 aa13.77□□□□□ -0.21
RTN3-210ENST00000540798 DNAJC5GQ8N7S2 189 aa13.77□□□□□ -0.21
RTN3-210ENST00000540798 NRG4Q8WWG1 115 aa13.77□□□□□ -0.21
RTN3-210ENST00000540798 EXOC2Q96KP1 924 aa13.77□□□□□ -0.21
RTN3-210ENST00000540798 SLC22A12Q96S37 553 aa13.77□□□□□ -0.21
RTN3-210ENST00000540798 SHCBP1LQ9BZQ2 653 aa13.77□□□□□ -0.21
RTN3-210ENST00000540798 MEAF6Q9HAF1 191 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms