RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 PTP4A2Q12974 167 aa14.12□□□□□ -0.15
USP3-204ENST00000540797 EID3Q8N140 333 aa14.12□□□□□ -0.15
USP3-204ENST00000540797 SLC4A5Q9BY07 1137 aa14.12□□□□□ -0.15
USP3-204ENST00000540797 DCLRE1BQ9H816 532 aa14.12□□□□□ -0.15
USP3-204ENST00000540797 CHRAC1Q9NRG0 131 aa14.12□□□□□ -0.15
USP3-204ENST00000540797 INTS7Q9NVH2 962 aaKnown RBP14.12□□□□□ -0.15
USP3-204ENST00000540797 ZNF232Q9UNY5 417 aa14.12□□□□□ -0.15
USP3-204ENST00000540797 TBX18O95935 607 aa14.12□□□□□ -0.15
USP3-204ENST00000540797 HGFP14210 728 aa14.12□□□□□ -0.15
USP3-204ENST00000540797 SLC11A1P49279 550 aa14.12□□□□□ -0.15
USP3-204ENST00000540797 CDCA2Q69YH5 1023 aaPredicted RBP14.12□□□□□ -0.15
USP3-204ENST00000540797 ZNF544Q6NX49 715 aa14.12□□□□□ -0.15
USP3-204ENST00000540797 ARCQ7LC44 396 aa14.12□□□□□ -0.15
USP3-204ENST00000540797 GPR135Q8IZ08 494 aa14.12□□□□□ -0.15
USP3-204ENST00000540797 ZNF567Q8N184 647 aa14.12□□□□□ -0.15
USP3-204ENST00000540797 WFIKKN2Q8TEU8 576 aa14.12□□□□□ -0.15
USP3-204ENST00000540797 CKAP2Q8WWK9 683 aa14.12□□□□□ -0.15
USP3-204ENST00000540797 TRIB2Q92519 343 aa14.12□□□□□ -0.15
USP3-204ENST00000540797 NKD2Q969F2 451 aaPredicted RBP14.12□□□□□ -0.15
USP3-204ENST00000540797 NACC2Q96BF6 587 aa14.12□□□□□ -0.15
USP3-204ENST00000540797 MARK4Q96L34 752 aa14.12□□□□□ -0.15
USP3-204ENST00000540797 KLHL32Q96NJ5 620 aa14.12□□□□□ -0.15
USP3-204ENST00000540797 ZDHHC4Q9NPG8 344 aa14.12□□□□□ -0.15
USP3-204ENST00000540797 DUOX1Q9NRD9 1551 aa14.12□□□□□ -0.15
USP3-204ENST00000540797 ERAL1O75616 437 aaKnown RBP14.11□□□□□ -0.15
USP3-204ENST00000540797 PRAMEF1O95521 474 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 HNRNPDQ14103 355 aaKnown RBP14.11□□□□□ -0.15
USP3-204ENST00000540797 HECTD2Q5U5R9 776 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 BHLHB9Q6PI77 547 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 CYP2R1Q6VVX0 501 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 ZBTB2Q8N680 514 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 TLR9Q9NR96 1032 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 NPEPPSL1A6NEC2 478 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 KRT8P05787 483 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 ATP6V1B1P15313 513 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 GPD2P43304 727 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 SF1Q15637 639 aaKnown RBP14.11□□□□□ -0.15
USP3-204ENST00000540797 INTS11Q5TA45 600 aaKnown RBP14.11□□□□□ -0.15
USP3-204ENST00000540797 TAF8Q7Z7C8 310 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 GATAD2AQ86YP4 633 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 ITFG1Q8TB96 612 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 CD101Q93033 1021 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 LDLRP01130 860 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 KCNE1P15382 129 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 ILF3Q12906 894 aaKnown RBP eCLIP14.11□□□□□ -0.152e-6■■■■□ 21.5
USP3-204ENST00000540797 LPIN1Q14693 890 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 TBATAQ96M53 351 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 GPN3Q9UHW5 284 aaPredicted RBP14.11□□□□□ -0.15
USP3-204ENST00000540797 RAP2CQ9Y3L5 183 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 PPEF2O14830 753 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 AZIN1O14977 448 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 IRAK2O43187 625 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 SNUPNO95149 360 aaKnown RBP14.11□□□□□ -0.15
USP3-204ENST00000540797 OR6A2O95222 327 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 LCA5LO95447 670 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 ASLP04424 464 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 HNRNPLP14866 589 aaKnown RBP eCLIP14.11□□□□□ -0.153e-6■■■□□ 15.1
USP3-204ENST00000540797 TCF3P15923 654 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 GDI1P31150 447 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 GABRB2P47870 512 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 SQLEQ14534 574 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 CRYBG2Q8N1P7 616 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 TMEM237Q96Q45 408 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 MYLK2Q9H1R3 596 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 FAM237BA0A1B0GVD1 139 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 IFNGR2P38484 337 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 ATXN1P54253 815 aaKnown RBP14.11□□□□□ -0.15
USP3-204ENST00000540797 CORO7P57737 925 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 BST1Q10588 318 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 DLG2Q15700 870 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 USP39Q53GS9 565 aaKnown RBP14.11□□□□□ -0.15
USP3-204ENST00000540797 OTUD3Q5T2D3 398 aaPredicted RBP14.11□□□□□ -0.15
USP3-204ENST00000540797 KHDRBS2Q5VWX1 349 aaKnown RBP14.11□□□□□ -0.15
USP3-204ENST00000540797 RERGLQ9H628 205 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 GKN1Q9NS71 199 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 ZNF229Q9UJW7 825 aa14.11□□□□□ -0.15
USP3-204ENST00000540797 PMM2O15305 246 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 SLC31A1O15431 190 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 NUDT17P0C025 328 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 FAM163BP0C2L3 166 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 MAPKAPK3Q16644 382 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 CCDC142Q17RM4 750 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 EML3Q32P44 896 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 ATXN7L2Q5T6C5 722 aaPredicted RBP14.1□□□□□ -0.15
USP3-204ENST00000540797 CASP12Q6UXS9 341 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 MREGQ8N565 214 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 PCDH20Q8N6Y1 951 aaKnown RBP14.1□□□□□ -0.15
USP3-204ENST00000540797 HAPLN3Q96S86 360 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 KLHL4Q9C0H6 718 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 SIX2Q9NPC8 291 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 ITPKAP23677 461 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 MAT2AP31153 395 aaKnown RBP14.1□□□□□ -0.15
USP3-204ENST00000540797 CLK3P49761 638 aaKnown RBP14.1□□□□□ -0.15
USP3-204ENST00000540797 TEAD4Q15561 434 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 KCTD19Q17RG1 926 aaPredicted RBP14.1□□□□□ -0.15
USP3-204ENST00000540797 AGMOQ6ZNB7 445 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 CHSY3Q70JA7 882 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 DPP10Q8N608 796 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 PHACTR1Q9C0D0 580 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 DUSP12Q9UNI6 340 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms