RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 OR6B1O95007 311 aa16.93■□□□□ 0.3
USP28-208ENST00000540438 GLP2RO95838 553 aa16.93■□□□□ 0.3
USP28-208ENST00000540438 PSMC3P17980 439 aa16.93■□□□□ 0.3
USP28-208ENST00000540438 TYMPP19971 482 aa16.93■□□□□ 0.3
USP28-208ENST00000540438 CRABP2P29373 138 aa16.93■□□□□ 0.3
USP28-208ENST00000540438 SERINC3Q13530 473 aa16.93■□□□□ 0.3
USP28-208ENST00000540438 PTK2BQ14289 1009 aa16.93■□□□□ 0.3
USP28-208ENST00000540438 FASTKQ14296 549 aaKnown RBP16.93■□□□□ 0.3
USP28-208ENST00000540438 VPS26BQ4G0F5 336 aa16.93■□□□□ 0.3
USP28-208ENST00000540438 C6orf52Q5T4I8 152 aa16.93■□□□□ 0.3
USP28-208ENST00000540438 MAP3K21Q5TCX8 1036 aa16.93■□□□□ 0.3
USP28-208ENST00000540438 PIANPQ8IYJ0 282 aa16.93■□□□□ 0.3
USP28-208ENST00000540438 SLC22A12Q96S37 553 aa16.93■□□□□ 0.3
USP28-208ENST00000540438 PKP2Q99959 881 aa16.93■□□□□ 0.3
USP28-208ENST00000540438 C1orf50Q9BV19 199 aa16.93■□□□□ 0.3
USP28-208ENST00000540438 BATF3Q9NR55 127 aa16.93■□□□□ 0.3
USP28-208ENST00000540438 ANKRD6Q9Y2G4 727 aa16.93■□□□□ 0.3
USP28-208ENST00000540438 TRAF6Q9Y4K3 522 aa16.93■□□□□ 0.3
USP28-208ENST00000540438 GREB1Q4ZG55 1949 aa16.92■□□□□ 0.3
USP28-208ENST00000540438 NR5A2O00482 541 aa16.92■□□□□ 0.3
USP28-208ENST00000540438 UBDO15205 165 aa16.92■□□□□ 0.3
USP28-208ENST00000540438 HOXC13P31276 330 aa16.92■□□□□ 0.3
USP28-208ENST00000540438 POU4F1Q01851 419 aa16.92■□□□□ 0.3
USP28-208ENST00000540438 PLD1Q13393 1074 aa16.92■□□□□ 0.3
USP28-208ENST00000540438 GPNMBQ14956 572 aa16.92■□□□□ 0.3
USP28-208ENST00000540438 TSNQ15631 228 aaKnown RBP16.92■□□□□ 0.3
USP28-208ENST00000540438 LRRC73Q5JTD7 316 aa16.92■□□□□ 0.3
USP28-208ENST00000540438 PCSK9Q8NBP7 692 aaKnown RBP16.92■□□□□ 0.3
USP28-208ENST00000540438 ST13P5Q8NFI4 369 aaPredicted RBP16.92■□□□□ 0.3
USP28-208ENST00000540438 MYLIPQ8WY64 445 aa16.92■□□□□ 0.3
USP28-208ENST00000540438 UPF3AQ9H1J1 476 aaKnown RBP16.92■□□□□ 0.3
USP28-208ENST00000540438 ZBTB26Q9HCK0 441 aa16.92■□□□□ 0.3
USP28-208ENST00000540438 CORO1CQ9ULV4 474 aaPredicted RBP16.92■□□□□ 0.3
USP28-208ENST00000540438 FAM149AA5PLN7 773 aa16.92■□□□□ 0.3
USP28-208ENST00000540438 MOXD2PA6NHM9 499 aa16.92■□□□□ 0.3
USP28-208ENST00000540438 F5H5T6 163 aa16.92■□□□□ 0.3
USP28-208ENST00000540438 RHOBTB1O94844 696 aa16.92■□□□□ 0.3
USP28-208ENST00000540438 PIK3CGP48736 1102 aa16.92■□□□□ 0.3
USP28-208ENST00000540438 SREBF2Q12772 1141 aa16.92■□□□□ 0.3
USP28-208ENST00000540438 FUT11Q495W5 492 aa16.92■□□□□ 0.3
USP28-208ENST00000540438 KLC3Q6P597 504 aa16.92■□□□□ 0.3
USP28-208ENST00000540438 CYHR1Q6ZMK1 362 aa16.92■□□□□ 0.3
USP28-208ENST00000540438 MUC3BQ9H195 1237 aa16.92■□□□□ 0.3
USP28-208ENST00000540438 PRDM16Q9HAZ2 1276 aa16.92■□□□□ 0.3
USP28-208ENST00000540438 TMEM248Q9NWD8 314 aa16.92■□□□□ 0.3
USP28-208ENST00000540438 VWA8A3KMH1 1905 aa16.92■□□□□ 0.3
USP28-208ENST00000540438 FBP2O00757 339 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 GJA1P17302 382 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 CYP2C18P33260 490 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 ALDH1A3P47895 512 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 TAF12Q16514 161 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 IL23RQ5VWK5 629 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 AFMIDQ63HM1 303 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 TAS2R42Q7RTR8 314 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 MDGA1Q8NFP4 955 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 ERLEC1Q96DZ1 483 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 KLHL4Q9C0H6 718 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 POLR1EQ9GZS1 481 aaKnown RBP16.91■□□□□ 0.3
USP28-208ENST00000540438 ATP13A1Q9HD20 1204 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 FKBPLQ9UIM3 349 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 FCF1Q9Y324 198 aaKnown RBP16.91■□□□□ 0.3
USP28-208ENST00000540438 REV3LO60673 3130 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 PSMD3O43242 534 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 ALPIP09923 528 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 TIAL1Q01085 375 aaKnown RBP eCLIP16.91■□□□□ 0.3
USP28-208ENST00000540438 ZRANB3Q5FWF4 1079 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 TMCO4Q5TGY1 634 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 OR52E8Q6IFG1 317 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 KIAA1841Q6NSI8 718 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 PSAPL1Q6NUJ1 521 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 UGT3A1Q6NUS8 523 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.91■□□□□ 0.3
USP28-208ENST00000540438 LRRC8DQ7L1W4 858 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 CNTN4Q8IWV2 1026 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 SIDT2Q8NBJ9 832 aaKnown RBP16.91■□□□□ 0.3
USP28-208ENST00000540438 ICA1LQ8NDH6 482 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 CEP70Q8NHQ1 597 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 VPS33AQ96AX1 596 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 GPR21Q99679 349 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 RPL26L1Q9UNX3 145 aaKnown RBP16.91■□□□□ 0.3
USP28-208ENST00000540438 SORCS3Q9UPU3 1222 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 NPEPPSL1A6NEC2 478 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 ALDOCP09972 364 aaKnown RBP16.91■□□□□ 0.3
USP28-208ENST00000540438 FAM163BP0C2L3 166 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 GGT5P36269 586 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 ZNF423Q2M1K9 1284 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 UNC50Q53HI1 259 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 IRGCQ6NXR0 463 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 MSANTD2Q6P1R3 559 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 GSTO2Q9H4Y5 243 aa16.91■□□□□ 0.3
USP28-208ENST00000540438 PSMD12O00232 456 aaPredicted RBP16.9■□□□□ 0.3
USP28-208ENST00000540438 PIP5K1BO14986 540 aa16.9■□□□□ 0.3
USP28-208ENST00000540438 SEC24AO95486 1093 aa16.9■□□□□ 0.3
USP28-208ENST00000540438 LEPRP48357 1165 aaKnown RBP16.9■□□□□ 0.3
USP28-208ENST00000540438 CSRP3P50461 194 aa16.9■□□□□ 0.3
USP28-208ENST00000540438 DIO3P55073 304 aa16.9■□□□□ 0.3
USP28-208ENST00000540438 MRPS35P82673 323 aaKnown RBP16.9■□□□□ 0.3
USP28-208ENST00000540438 ZRSR2Q15696 482 aaKnown RBP16.9■□□□□ 0.3
USP28-208ENST00000540438 PTPRNQ16849 979 aa16.9■□□□□ 0.3
USP28-208ENST00000540438 GLT6D1Q7Z4J2 308 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms