RNA–Protein interactions for RNA: ENST00000539533.3

PCDHB17P-201, Transcript of protocadherin beta 17 pseudogene, humanhuman

BASIC

Gene PCDHB17P, Length 2,393 nt, Biotype transcribed unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB17P-201ENST00000539533 PIRTP0C851 137 aa17.14■□□□□ 0.33
PCDHB17P-201ENST00000539533 KITP10721 976 aa17.14■□□□□ 0.33
PCDHB17P-201ENST00000539533 ACTR3P61158 418 aa17.14■□□□□ 0.33
PCDHB17P-201ENST00000539533 DNAL1Q4LDG9 190 aa17.14■□□□□ 0.33
PCDHB17P-201ENST00000539533 GRTP1Q5TC63 336 aa17.14■□□□□ 0.33
PCDHB17P-201ENST00000539533 MYLK4Q86YV6 388 aaPredicted RBP17.14■□□□□ 0.33
PCDHB17P-201ENST00000539533 CRLF3Q8IUI8 442 aa17.14■□□□□ 0.33
PCDHB17P-201ENST00000539533 DCAF4L2Q8NA75 395 aa17.14■□□□□ 0.33
PCDHB17P-201ENST00000539533 FIBINQ8TAL6 211 aa17.14■□□□□ 0.33
PCDHB17P-201ENST00000539533 TRIB3Q96RU7 358 aa17.14■□□□□ 0.33
PCDHB17P-201ENST00000539533 RBBP8Q99708 897 aa17.14■□□□□ 0.33
PCDHB17P-201ENST00000539533 THTPAQ9BU02 230 aa17.14■□□□□ 0.33
PCDHB17P-201ENST00000539533 CCDC106Q9BWC9 280 aa17.14■□□□□ 0.33
PCDHB17P-201ENST00000539533 DPP7Q9UHL4 492 aa17.14■□□□□ 0.33
PCDHB17P-201ENST00000539533 MRPS23Q9Y3D9 190 aaKnown RBP17.14■□□□□ 0.33
PCDHB17P-201ENST00000539533 KCTD3Q9Y597 815 aa17.14■□□□□ 0.33
PCDHB17P-201ENST00000539533 PCDHGC4Q9Y5F7 938 aa17.14■□□□□ 0.33
PCDHB17P-201ENST00000539533 EPOPA6NHQ4 379 aa17.13■□□□□ 0.33
PCDHB17P-201ENST00000539533 TOP3BO95985 862 aaKnown RBP17.13■□□□□ 0.33
PCDHB17P-201ENST00000539533 EPOP01588 193 aa17.13■□□□□ 0.33
PCDHB17P-201ENST00000539533 CYBBP04839 570 aa17.13■□□□□ 0.33
PCDHB17P-201ENST00000539533 INO80DQ53TQ3 878 aaPredicted RBP17.13■□□□□ 0.33
PCDHB17P-201ENST00000539533 ARMC3Q5W041 872 aa17.13■□□□□ 0.33
PCDHB17P-201ENST00000539533 TIFABQ6ZNK6 161 aa17.13■□□□□ 0.33
PCDHB17P-201ENST00000539533 SMG7Q92540 1137 aaKnown RBP17.13■□□□□ 0.33
PCDHB17P-201ENST00000539533 NR1H4Q96RI1 486 aaPredicted RBP17.13■□□□□ 0.33
PCDHB17P-201ENST00000539533 KIAA1522Q9P206 1035 aaPredicted RBP17.13■□□□□ 0.33
PCDHB17P-201ENST00000539533 LHX3Q9UBR4 397 aa17.13■□□□□ 0.33
PCDHB17P-201ENST00000539533 SLC7A8Q9UHI5 535 aa17.13■□□□□ 0.33
PCDHB17P-201ENST00000539533 INTS6Q9UL03 887 aaKnown RBP17.13■□□□□ 0.33
PCDHB17P-201ENST00000539533 ATG2AQ2TAZ0 1938 aa17.13■□□□□ 0.33
PCDHB17P-201ENST00000539533 TPP1O14773 563 aa17.13■□□□□ 0.33
PCDHB17P-201ENST00000539533 SMAD6O43541 496 aaKnown RBP17.13■□□□□ 0.33
PCDHB17P-201ENST00000539533 PYGLP06737 847 aa17.13■□□□□ 0.33
PCDHB17P-201ENST00000539533 HLA-DPA1P20036 260 aa17.13■□□□□ 0.33
PCDHB17P-201ENST00000539533 ERFP50548 548 aa17.13■□□□□ 0.33
PCDHB17P-201ENST00000539533 ALDH18A1P54886 795 aaKnown RBP17.13■□□□□ 0.33
PCDHB17P-201ENST00000539533 PDE1BQ01064 536 aa17.13■□□□□ 0.33
PCDHB17P-201ENST00000539533 DYNC1I2Q13409 638 aaKnown RBP17.13■□□□□ 0.33
PCDHB17P-201ENST00000539533 TBCCQ15814 346 aa17.13■□□□□ 0.33
PCDHB17P-201ENST00000539533 TSTD2Q5T7W7 516 aa17.13■□□□□ 0.33
PCDHB17P-201ENST00000539533 PPP2R2DQ66LE6 453 aa17.13■□□□□ 0.33
PCDHB17P-201ENST00000539533 FSTL4Q6MZW2 842 aa17.13■□□□□ 0.33
PCDHB17P-201ENST00000539533 IZUMO2Q6UXV1 221 aa17.13■□□□□ 0.33
PCDHB17P-201ENST00000539533 DENND6AQ8IWF6 608 aa17.13■□□□□ 0.33
PCDHB17P-201ENST00000539533 NDUFAF2Q8N183 169 aa17.13■□□□□ 0.33
PCDHB17P-201ENST00000539533 VN1R2Q8NFZ6 395 aa17.13■□□□□ 0.33
PCDHB17P-201ENST00000539533 BLOC1S5Q8TDH9 187 aa17.13■□□□□ 0.33
PCDHB17P-201ENST00000539533 GBP5Q96PP8 586 aa17.13■□□□□ 0.33
PCDHB17P-201ENST00000539533 RANBP9Q96S59 729 aa17.13■□□□□ 0.33
PCDHB17P-201ENST00000539533 C2orf49Q9BVC5 232 aaPredicted RBP17.13■□□□□ 0.33
PCDHB17P-201ENST00000539533 PDP2Q9P2J9 529 aa17.13■□□□□ 0.33
PCDHB17P-201ENST00000539533 SZT2Q5T011 3432 aa17.12■□□□□ 0.33
PCDHB17P-201ENST00000539533 RFXAPO00287 272 aa17.12■□□□□ 0.33
PCDHB17P-201ENST00000539533 CCL22O00626 93 aa17.12■□□□□ 0.33
PCDHB17P-201ENST00000539533 SNNO75324 88 aaPredicted RBP17.12■□□□□ 0.33
PCDHB17P-201ENST00000539533 PRLP01236 227 aa17.12■□□□□ 0.33
PCDHB17P-201ENST00000539533 FGF1P05230 155 aa17.12■□□□□ 0.33
PCDHB17P-201ENST00000539533 AP2B1P63010 937 aa17.12■□□□□ 0.33
PCDHB17P-201ENST00000539533 CTBP1Q13363 440 aa17.12■□□□□ 0.33
PCDHB17P-201ENST00000539533 ZNF77Q15935 545 aa17.12■□□□□ 0.33
PCDHB17P-201ENST00000539533 ATXN7L2Q5T6C5 722 aaPredicted RBP17.12■□□□□ 0.33
PCDHB17P-201ENST00000539533 OR13J1Q8NGT2 312 aa17.12■□□□□ 0.33
PCDHB17P-201ENST00000539533 RAB3IL1Q8TBN0 382 aa17.12■□□□□ 0.33
PCDHB17P-201ENST00000539533 SMIM14Q96QK8 99 aa17.12■□□□□ 0.33
PCDHB17P-201ENST00000539533 C20orf27Q9GZN8 174 aa17.12■□□□□ 0.33
PCDHB17P-201ENST00000539533 NDE1Q9NXR1 346 aa17.12■□□□□ 0.33
PCDHB17P-201ENST00000539533 MROH6A6NGR9 719 aa17.11■□□□□ 0.33
PCDHB17P-201ENST00000539533 PRR5-ARHGAP8B1AHC4 643 aa17.11■□□□□ 0.33
PCDHB17P-201ENST00000539533 ZNF197O14709 1029 aa17.11■□□□□ 0.33
PCDHB17P-201ENST00000539533 LDB2O43679 373 aa17.11■□□□□ 0.33
PCDHB17P-201ENST00000539533 BUD23O43709 281 aaKnown RBP17.11■□□□□ 0.33
PCDHB17P-201ENST00000539533 NDST3O95803 873 aa17.11■□□□□ 0.33
PCDHB17P-201ENST00000539533 UBTFL6P0CB48 400 aaPredicted RBP17.11■□□□□ 0.33
PCDHB17P-201ENST00000539533 GABRB3P28472 473 aa17.11■□□□□ 0.33
PCDHB17P-201ENST00000539533 HLA-FP30511 346 aa17.11■□□□□ 0.33
PCDHB17P-201ENST00000539533 SPRP35270 261 aaPredicted RBP17.11■□□□□ 0.33
PCDHB17P-201ENST00000539533 RANBP1P43487 201 aa17.11■□□□□ 0.33
PCDHB17P-201ENST00000539533 RHOAP61586 193 aa17.11■□□□□ 0.33
PCDHB17P-201ENST00000539533 ARHGAP8P85298 464 aa17.11■□□□□ 0.33
PCDHB17P-201ENST00000539533 PTPRCAPQ14761 206 aa17.11■□□□□ 0.33
PCDHB17P-201ENST00000539533 DUSP6Q16828 381 aa17.11■□□□□ 0.33
PCDHB17P-201ENST00000539533 PLEKHG6Q3KR16 790 aa17.11■□□□□ 0.33
PCDHB17P-201ENST00000539533 C1orf146Q5VVC0 180 aa17.11■□□□□ 0.33
PCDHB17P-201ENST00000539533 DCLK2Q8N568 766 aa17.11■□□□□ 0.33
PCDHB17P-201ENST00000539533 ACVR1CQ8NER5 493 aa17.11■□□□□ 0.33
PCDHB17P-201ENST00000539533 RILPQ96NA2 401 aa17.11■□□□□ 0.33
PCDHB17P-201ENST00000539533 MCMBPQ9BTE3 642 aa17.11■□□□□ 0.33
PCDHB17P-201ENST00000539533 ABCB8Q9NUT2 735 aa17.11■□□□□ 0.33
PCDHB17P-201ENST00000539533 RAI2Q9Y5P3 530 aa17.11■□□□□ 0.33
PCDHB17P-201ENST00000539533 ARL5AQ9Y689 179 aa17.11■□□□□ 0.33
PCDHB17P-201ENST00000539533 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.11■□□□□ 0.33
PCDHB17P-201ENST00000539533 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.11■□□□□ 0.33
PCDHB17P-201ENST00000539533 CCDC85CA6NKD9 419 aa17.11■□□□□ 0.33
PCDHB17P-201ENST00000539533 NEDD8-MDP1E9PL57 170 aa17.11■□□□□ 0.33
PCDHB17P-201ENST00000539533 ATP5BP06576 529 aaKnown RBP17.11■□□□□ 0.33
PCDHB17P-201ENST00000539533 BPGMP07738 259 aa17.11■□□□□ 0.33
PCDHB17P-201ENST00000539533 SERPINA6P08185 405 aa17.11■□□□□ 0.33
PCDHB17P-201ENST00000539533 GMPRP36959 345 aa17.11■□□□□ 0.33
PCDHB17P-201ENST00000539533 LIMK2P53671 638 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms