RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 FUBP1Q96AE4 644 aaKnown RBP9.17□□□□□ -0.94
USP28-205ENST00000537706 SGSM3Q96HU1 749 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 NCAPGQ9BPX3 1015 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 C7orf25Q9BPX7 421 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 LDHAL6BQ9BYZ2 381 aaPredicted RBP9.17□□□□□ -0.94
USP28-205ENST00000537706 MAGEF1Q9HAY2 307 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 PHPT1Q9NRX4 125 aaPredicted RBP9.17□□□□□ -0.94
USP28-205ENST00000537706 KBTBD4Q9NVX7 518 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 HPCAL4Q9UM19 191 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 ZDHHC9Q9Y397 364 aa9.17□□□□□ -0.94
USP28-205ENST00000537706 PVALEFA0A1B0GWK0 134 aa9.16□□□□□ -0.94
USP28-205ENST00000537706 PDXKO00764 312 aa9.16□□□□□ -0.94
USP28-205ENST00000537706 FECHP22830 423 aa9.16□□□□□ -0.94
USP28-205ENST00000537706 GNPDA1P46926 289 aa9.16□□□□□ -0.94
USP28-205ENST00000537706 MXI1P50539 228 aa9.16□□□□□ -0.94
USP28-205ENST00000537706 EPHA4P54764 986 aa9.16□□□□□ -0.94
USP28-205ENST00000537706 PPP3CAQ08209 521 aa9.16□□□□□ -0.94
USP28-205ENST00000537706 CUL2Q13617 745 aa9.16□□□□□ -0.94
USP28-205ENST00000537706 KYNUQ16719 465 aa9.16□□□□□ -0.94
USP28-205ENST00000537706 MIIPQ5JXC2 388 aa9.16□□□□□ -0.94
USP28-205ENST00000537706 C1orf220Q5T0J3 134 aa9.16□□□□□ -0.94
USP28-205ENST00000537706 NYAP1Q6ZVC0 841 aa9.16□□□□□ -0.94
USP28-205ENST00000537706 PPP1R3BQ86XI6 285 aa9.16□□□□□ -0.94
USP28-205ENST00000537706 NAGSQ8N159 534 aa9.16□□□□□ -0.94
USP28-205ENST00000537706 RELTQ969Z4 430 aa9.16□□□□□ -0.94
USP28-205ENST00000537706 HMCESQ96FZ2 354 aa9.16□□□□□ -0.94
USP28-205ENST00000537706 EEF2KMTQ96G04 330 aa9.16□□□□□ -0.94
USP28-205ENST00000537706 GDAP1L1Q96MZ0 367 aa9.16□□□□□ -0.94
USP28-205ENST00000537706 OR6C1Q96RD1 312 aa9.16□□□□□ -0.94
USP28-205ENST00000537706 BRD8Q9H0E9 1235 aa9.16□□□□□ -0.94
USP28-205ENST00000537706 FARSAQ9Y285 508 aaKnown RBP9.16□□□□□ -0.94
USP28-205ENST00000537706 TEX33O43247 280 aa9.15□□□□□ -0.94
USP28-205ENST00000537706 PAGE1O75459 146 aa9.15□□□□□ -0.94
USP28-205ENST00000537706 SPAG6O75602 509 aa9.15□□□□□ -0.94
USP28-205ENST00000537706 GABBR2O75899 941 aa9.15□□□□□ -0.94
USP28-205ENST00000537706 IGSF6O95976 241 aa9.15□□□□□ -0.94
USP28-205ENST00000537706 TBXAS1P24557 533 aaPredicted RBP9.15□□□□□ -0.94
USP28-205ENST00000537706 ACTR1BP42025 376 aa9.15□□□□□ -0.94
USP28-205ENST00000537706 FASLGP48023 281 aa9.15□□□□□ -0.94
USP28-205ENST00000537706 ACTR1AP61163 376 aa9.15□□□□□ -0.94
USP28-205ENST00000537706 TLE4Q04727 773 aa9.15□□□□□ -0.94
USP28-205ENST00000537706 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.15□□□□□ -0.94
USP28-205ENST00000537706 TFAP2DQ7Z6R9 452 aa9.15□□□□□ -0.94
USP28-205ENST00000537706 MRGPRGQ86SM5 289 aa9.15□□□□□ -0.94
USP28-205ENST00000537706 KCNMB4Q86W47 210 aa9.15□□□□□ -0.94
USP28-205ENST00000537706 NRROSQ86YC3 692 aa9.15□□□□□ -0.94
USP28-205ENST00000537706 ZNF295-AS1Q8N0V1 137 aa9.15□□□□□ -0.94
USP28-205ENST00000537706 ARFGAP1Q8N6T3 406 aa9.15□□□□□ -0.94
USP28-205ENST00000537706 HCAR2Q8TDS4 363 aa9.15□□□□□ -0.94
USP28-205ENST00000537706 ITLN2Q8WWU7 325 aaPredicted RBP9.15□□□□□ -0.94
USP28-205ENST00000537706 PATE1Q8WXA2 126 aa9.15□□□□□ -0.94
USP28-205ENST00000537706 ELMO2Q96JJ3 720 aa9.15□□□□□ -0.94
USP28-205ENST00000537706 BARD1Q99728 777 aaKnown RBP9.15□□□□□ -0.94
USP28-205ENST00000537706 THAP9Q9H5L6 903 aa9.15□□□□□ -0.94
USP28-205ENST00000537706 MCCC2Q9HCC0 563 aa9.15□□□□□ -0.94
USP28-205ENST00000537706 PDE7BQ9NP56 450 aa9.15□□□□□ -0.94
USP28-205ENST00000537706 TMEM51Q9NW97 253 aa9.15□□□□□ -0.94
USP28-205ENST00000537706 SIDT1Q9NXL6 827 aaKnown RBP9.15□□□□□ -0.94
USP28-205ENST00000537706 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.15□□□□□ -0.94
USP28-205ENST00000537706 CSMD1Q96PZ7 3565 aa9.15□□□□□ -0.94
USP28-205ENST00000537706 CFAP69A5D8W1 941 aa9.15□□□□□ -0.95
USP28-205ENST00000537706 GOLGA6L3A6NEY3 463 aa9.15□□□□□ -0.95
USP28-205ENST00000537706 F9P00740 461 aa9.15□□□□□ -0.95
USP28-205ENST00000537706 MYCLP1P12525 358 aaPredicted RBP9.15□□□□□ -0.95
USP28-205ENST00000537706 AK4P27144 223 aaPredicted RBP9.15□□□□□ -0.95
USP28-205ENST00000537706 LIG3P49916 1009 aa9.15□□□□□ -0.95
USP28-205ENST00000537706 ALFQ53S48 1182 aa9.15□□□□□ -0.95
USP28-205ENST00000537706 HGSNATQ68CP4 663 aa9.15□□□□□ -0.95
USP28-205ENST00000537706 KCTD16Q68DU8 428 aa9.15□□□□□ -0.95
USP28-205ENST00000537706 TGIF2LYQ8IUE0 185 aa9.15□□□□□ -0.95
USP28-205ENST00000537706 IQUBQ8NA54 791 aa9.15□□□□□ -0.95
USP28-205ENST00000537706 AVL9Q8NBF6 648 aa9.15□□□□□ -0.95
USP28-205ENST00000537706 COG1Q8WTW3 980 aa9.15□□□□□ -0.95
USP28-205ENST00000537706 AGAP3Q96P47 875 aa9.15□□□□□ -0.95
USP28-205ENST00000537706 PCDHGA10Q9Y5H3 936 aa9.15□□□□□ -0.95
USP28-205ENST00000537706 TNRC6AQ8NDV7 1962 aaKnown RBP9.15□□□□□ -0.95
USP28-205ENST00000537706 MN1Q10571 1320 aaPredicted RBP9.15□□□□□ -0.95
USP28-205ENST00000537706 TOX3O15405 576 aaPredicted RBP9.14□□□□□ -0.95
USP28-205ENST00000537706 ZMPSTE24O75844 475 aa9.14□□□□□ -0.95
USP28-205ENST00000537706 FGF5P12034 268 aa9.14□□□□□ -0.95
USP28-205ENST00000537706 PDIA4P13667 645 aaKnown RBP9.14□□□□□ -0.95
USP28-205ENST00000537706 SLC2A4P14672 509 aa9.14□□□□□ -0.95
USP28-205ENST00000537706 RPL13P26373 211 aaKnown RBP9.14□□□□□ -0.95
USP28-205ENST00000537706 PSMC2P35998 433 aaKnown RBP9.14□□□□□ -0.95
USP28-205ENST00000537706 GGCXP38435 758 aa9.14□□□□□ -0.95
USP28-205ENST00000537706 ARF5P84085 180 aa9.14□□□□□ -0.95
USP28-205ENST00000537706 HHEXQ03014 270 aa9.14□□□□□ -0.95
USP28-205ENST00000537706 GNA12Q03113 381 aa9.14□□□□□ -0.95
USP28-205ENST00000537706 NME3Q13232 169 aa9.14□□□□□ -0.95
USP28-205ENST00000537706 GRM3Q14832 879 aa9.14□□□□□ -0.95
USP28-205ENST00000537706 ASIC2Q16515 512 aa9.14□□□□□ -0.95
USP28-205ENST00000537706 FCRL6Q6DN72 434 aa9.14□□□□□ -0.95
USP28-205ENST00000537706 XKRXQ6PP77 449 aa9.14□□□□□ -0.95
USP28-205ENST00000537706 ZNF761Q86XN6 746 aaPredicted RBP9.14□□□□□ -0.95
USP28-205ENST00000537706 PLA2G15Q8NCC3 412 aa9.14□□□□□ -0.95
USP28-205ENST00000537706 SEMA4DQ92854 862 aa9.14□□□□□ -0.95
USP28-205ENST00000537706 ARHGEF2Q92974 986 aaKnown RBP9.14□□□□□ -0.95
USP28-205ENST00000537706 FCRL4Q96PJ5 515 aa9.14□□□□□ -0.95
USP28-205ENST00000537706 SNX7Q9UNH6 387 aa9.14□□□□□ -0.95
USP28-205ENST00000537706 PCDHB4Q9Y5E5 795 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms