RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 WISP3O95389 354 aaPredicted RBP13.17□□□□□ -0.3
LDLR-203ENST00000535915 PIRTP0C851 137 aa13.17□□□□□ -0.3
LDLR-203ENST00000535915 CHN2P52757 468 aa13.17□□□□□ -0.3
LDLR-203ENST00000535915 INHBCP55103 352 aa13.17□□□□□ -0.3
LDLR-203ENST00000535915 TLR1Q15399 786 aa13.17□□□□□ -0.3
LDLR-203ENST00000535915 TMEM126BQ8IUX1 230 aa13.17□□□□□ -0.3
LDLR-203ENST00000535915 LILRA2Q8N149 483 aa13.17□□□□□ -0.3
LDLR-203ENST00000535915 CATSPER1Q8NEC5 780 aa13.17□□□□□ -0.3
LDLR-203ENST00000535915 FAM81AQ8TBF8 368 aa13.17□□□□□ -0.3
LDLR-203ENST00000535915 L3HYPDHQ96EM0 354 aa13.17□□□□□ -0.3
LDLR-203ENST00000535915 CACNA2D2Q9NY47 1150 aa13.17□□□□□ -0.3
LDLR-203ENST00000535915 CHD5Q8TDI0 1954 aa13.17□□□□□ -0.3
LDLR-203ENST00000535915 A0A1B0GVG6 124 aa13.17□□□□□ -0.3
LDLR-203ENST00000535915 E7ENX8 843 aa13.17□□□□□ -0.3
LDLR-203ENST00000535915 MUSKO15146 869 aa13.17□□□□□ -0.3
LDLR-203ENST00000535915 SNRPB2P08579 225 aaKnown RBP13.17□□□□□ -0.3
LDLR-203ENST00000535915 SLC10A3P09131 477 aa13.17□□□□□ -0.3
LDLR-203ENST00000535915 PRKAR2AP13861 404 aaKnown RBP13.17□□□□□ -0.3
LDLR-203ENST00000535915 CDH13P55290 713 aa13.17□□□□□ -0.3
LDLR-203ENST00000535915 TNK2Q07912 1038 aa13.17□□□□□ -0.3
LDLR-203ENST00000535915 GRM2Q14416 872 aa13.17□□□□□ -0.3
LDLR-203ENST00000535915 MGAT5BQ3V5L5 792 aa13.17□□□□□ -0.3
LDLR-203ENST00000535915 LIN52Q52LA3 116 aa13.17□□□□□ -0.3
LDLR-203ENST00000535915 MRNIPQ6NTE8 343 aa13.17□□□□□ -0.3
LDLR-203ENST00000535915 OR13C4Q8NGS5 318 aa13.17□□□□□ -0.3
LDLR-203ENST00000535915 PIP4K2CQ8TBX8 421 aa13.17□□□□□ -0.3
LDLR-203ENST00000535915 LINC01599Q8WXQ3 324 aa13.17□□□□□ -0.3
LDLR-203ENST00000535915 ASB9Q96DX5 294 aa13.17□□□□□ -0.3
LDLR-203ENST00000535915 MYEOVQ96EZ4 313 aa13.17□□□□□ -0.3
LDLR-203ENST00000535915 SEPT5Q99719 369 aaPredicted RBP13.17□□□□□ -0.3
LDLR-203ENST00000535915 PKP2Q99959 881 aa13.17□□□□□ -0.3
LDLR-203ENST00000535915 UNC93B1Q9H1C4 597 aa13.17□□□□□ -0.3
LDLR-203ENST00000535915 Q9H521 79 aa13.17□□□□□ -0.3
LDLR-203ENST00000535915 IL37Q9NZH6 218 aa13.17□□□□□ -0.3
LDLR-203ENST00000535915 FAM92AA1XBS5 289 aa13.16□□□□□ -0.3
LDLR-203ENST00000535915 CCDC162PA2VCL2 907 aa13.16□□□□□ -0.3
LDLR-203ENST00000535915 FBP2O00757 339 aa13.16□□□□□ -0.3
LDLR-203ENST00000535915 SYN3O14994 580 aa13.16□□□□□ -0.3
LDLR-203ENST00000535915 FGF1P05230 155 aa13.16□□□□□ -0.3
LDLR-203ENST00000535915 CD1DP15813 335 aa13.16□□□□□ -0.3
LDLR-203ENST00000535915 HLA-DPA1P20036 260 aa13.16□□□□□ -0.3
LDLR-203ENST00000535915 FDXRP22570 491 aa13.16□□□□□ -0.3
LDLR-203ENST00000535915 HERVK_113P63132 956 aa13.16□□□□□ -0.3
LDLR-203ENST00000535915 LRP8Q14114 963 aa13.16□□□□□ -0.3
LDLR-203ENST00000535915 GEN1Q17RS7 908 aa13.16□□□□□ -0.3
LDLR-203ENST00000535915 UNC50Q53HI1 259 aa13.16□□□□□ -0.3
LDLR-203ENST00000535915 ZNF549Q6P9A3 640 aa13.16□□□□□ -0.3
LDLR-203ENST00000535915 PAOXQ6QHF9 649 aa13.16□□□□□ -0.3
LDLR-203ENST00000535915 UGT2A3Q6UWM9 527 aa13.16□□□□□ -0.3
LDLR-203ENST00000535915 LAYNQ6UX15 382 aa13.16□□□□□ -0.3
LDLR-203ENST00000535915 FEM1CQ96JP0 617 aa13.16□□□□□ -0.3
LDLR-203ENST00000535915 ERVK-6Q9BXR3 956 aa13.16□□□□□ -0.3
LDLR-203ENST00000535915 MRPL40Q9NQ50 206 aaKnown RBP13.16□□□□□ -0.3
LDLR-203ENST00000535915 C15orf38-AP3S2A0A0A6YYH1 394 aa13.16□□□□□ -0.3
LDLR-203ENST00000535915 PRSS51A0A1B0GVH4 220 aa13.16□□□□□ -0.3
LDLR-203ENST00000535915 PRAMEF11O60813 436 aa13.16□□□□□ -0.3
LDLR-203ENST00000535915 PENKP01210 267 aaPredicted RBP13.16□□□□□ -0.3
LDLR-203ENST00000535915 PIM1P11309 404 aaPredicted RBP13.16□□□□□ -0.3
LDLR-203ENST00000535915 ELNP15502 786 aa13.16□□□□□ -0.3
LDLR-203ENST00000535915 PMLP29590 882 aa13.16□□□□□ -0.3
LDLR-203ENST00000535915 YBEYP58557 167 aaPredicted RBP13.16□□□□□ -0.3
LDLR-203ENST00000535915 SREBF2Q12772 1141 aa13.16□□□□□ -0.3
LDLR-203ENST00000535915 TRIM25Q14258 630 aaKnown RBP13.16□□□□□ -0.3
LDLR-203ENST00000535915 SEMA3AQ14563 771 aa13.16□□□□□ -0.3
LDLR-203ENST00000535915 MBTPS1Q14703 1052 aa13.16□□□□□ -0.3
LDLR-203ENST00000535915 ARPINQ7Z6K5 226 aa13.16□□□□□ -0.3
LDLR-203ENST00000535915 CFAP52Q8N1V2 620 aa13.16□□□□□ -0.3
LDLR-203ENST00000535915 ADCY4Q8NFM4 1077 aa13.16□□□□□ -0.3
LDLR-203ENST00000535915 OR9I1Q8NGQ6 314 aa13.16□□□□□ -0.3
LDLR-203ENST00000535915 C19orf60Q96EN9 201 aa13.16□□□□□ -0.3
LDLR-203ENST00000535915 PCDHAC1Q9H158 963 aa13.16□□□□□ -0.3
LDLR-203ENST00000535915 CCSER2Q9H7U1 834 aa13.16□□□□□ -0.3
LDLR-203ENST00000535915 CATSPERZQ9NTU4 200 aa13.16□□□□□ -0.3
LDLR-203ENST00000535915 LMCD1Q9NZU5 365 aa13.16□□□□□ -0.3
LDLR-203ENST00000535915 SUCOQ9UBS9 1254 aaKnown RBP13.16□□□□□ -0.3
LDLR-203ENST00000535915 MRASO14807 208 aa13.15□□□□□ -0.3
LDLR-203ENST00000535915 DENRO43583 198 aaKnown RBP13.15□□□□□ -0.3
LDLR-203ENST00000535915 DNAJA2O60884 412 aa13.15□□□□□ -0.3
LDLR-203ENST00000535915 RPP40O75818 363 aaKnown RBP13.15□□□□□ -0.3
LDLR-203ENST00000535915 IGLV3-27P01718 113 aa13.15□□□□□ -0.3
LDLR-203ENST00000535915 MAPKAPK2P49137 400 aa13.15□□□□□ -0.3
LDLR-203ENST00000535915 NFKB2Q00653 900 aa13.15□□□□□ -0.3
LDLR-203ENST00000535915 ACVR1Q04771 509 aa13.15□□□□□ -0.3
LDLR-203ENST00000535915 NADSYN1Q6IA69 706 aa13.15□□□□□ -0.3
LDLR-203ENST00000535915 LARP4Q71RC2 724 aaKnown RBP eCLIP13.15□□□□□ -0.33e-8■■□□□ 12.3
LDLR-203ENST00000535915 PTGR2Q8N8N7 351 aaPredicted RBP13.15□□□□□ -0.3
LDLR-203ENST00000535915 OR4L1Q8NH43 312 aa13.15□□□□□ -0.3
LDLR-203ENST00000535915 BRSK1Q8TDC3 778 aa13.15□□□□□ -0.3
LDLR-203ENST00000535915 SLC25A23Q9BV35 468 aa13.15□□□□□ -0.3
LDLR-203ENST00000535915 FBRSL1Q9HCM7 1045 aaKnown RBP13.15□□□□□ -0.3
LDLR-203ENST00000535915 SPAG4Q9NPE6 437 aa13.15□□□□□ -0.3
LDLR-203ENST00000535915 POLR3BQ9NW08 1133 aaPredicted RBP13.15□□□□□ -0.3
LDLR-203ENST00000535915 CA12O43570 354 aa13.15□□□□□ -0.3
LDLR-203ENST00000535915 SIX3O95343 332 aaPredicted RBP13.15□□□□□ -0.3
LDLR-203ENST00000535915 CRTAMO95727 393 aa13.15□□□□□ -0.3
LDLR-203ENST00000535915 SERPINF2P08697 491 aa13.15□□□□□ -0.3
LDLR-203ENST00000535915 CST5P28325 142 aaPredicted RBP13.15□□□□□ -0.3
LDLR-203ENST00000535915 STX1BP61266 288 aa13.15□□□□□ -0.3
LDLR-203ENST00000535915 RALGDSQ12967 914 aa13.15□□□□□ -0.3
LDLR-203ENST00000535915 IL23RQ5VWK5 629 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms