RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 TEX101Q9BY14 249 aa11.37□□□□□ -0.59
VPS28-214ENST00000531032 CYP4F12Q9HCS2 524 aa11.37□□□□□ -0.59
VPS28-214ENST00000531032 KCTD5Q9NXV2 234 aa11.37□□□□□ -0.59
VPS28-214ENST00000531032 LRIT1Q9P2V4 623 aa11.37□□□□□ -0.59
VPS28-214ENST00000531032 CNOT8Q9UFF9 292 aaKnown RBP11.37□□□□□ -0.59
VPS28-214ENST00000531032 LOXL2Q9Y4K0 774 aa11.37□□□□□ -0.59
VPS28-214ENST00000531032 SCINQ9Y6U3 715 aa11.37□□□□□ -0.59
VPS28-214ENST00000531032 RNF215Q9Y6U7 377 aa11.37□□□□□ -0.59
VPS28-214ENST00000531032 ARHGEF17Q96PE2 2063 aaPredicted RBP11.37□□□□□ -0.59
VPS28-214ENST00000531032 A8MX80 341 aa11.36□□□□□ -0.59
VPS28-214ENST00000531032 B8ZZF3 427 aa11.36□□□□□ -0.59
VPS28-214ENST00000531032 H3BRJ5 948 aa11.36□□□□□ -0.59
VPS28-214ENST00000531032 J3QKU1 62 aa11.36□□□□□ -0.59
VPS28-214ENST00000531032 HEXIM1O94992 359 aaKnown RBP11.36□□□□□ -0.59
VPS28-214ENST00000531032 JMJD7P0C870 316 aa11.36□□□□□ -0.59
VPS28-214ENST00000531032 LIPCP11150 499 aa11.36□□□□□ -0.59
VPS28-214ENST00000531032 IL1R2P27930 398 aa11.36□□□□□ -0.59
VPS28-214ENST00000531032 VIPR1P32241 457 aa11.36□□□□□ -0.59
VPS28-214ENST00000531032 ZNF235Q14590 738 aa11.36□□□□□ -0.59
VPS28-214ENST00000531032 ACOX1Q15067 660 aa11.36□□□□□ -0.59
VPS28-214ENST00000531032 ANO6Q4KMQ2 910 aa11.36□□□□□ -0.59
VPS28-214ENST00000531032 TMCO3Q6UWJ1 677 aa11.36□□□□□ -0.59
VPS28-214ENST00000531032 TMPRSS9Q7Z410 1059 aa11.36□□□□□ -0.59
VPS28-214ENST00000531032 POLNQ7Z5Q5 900 aa11.36□□□□□ -0.59
VPS28-214ENST00000531032 C17orf82Q86X59 251 aaPredicted RBP11.36□□□□□ -0.59
VPS28-214ENST00000531032 NRROSQ86YC3 692 aa11.36□□□□□ -0.59
VPS28-214ENST00000531032 JAMLQ86YT9 394 aa11.36□□□□□ -0.59
VPS28-214ENST00000531032 SLITRK4Q8IW52 837 aa11.36□□□□□ -0.59
VPS28-214ENST00000531032 CBARPQ8N350 705 aaPredicted RBP11.36□□□□□ -0.59
VPS28-214ENST00000531032 GPBAR1Q8TDU6 330 aa11.36□□□□□ -0.59
VPS28-214ENST00000531032 ZNF653Q96CK0 615 aa11.36□□□□□ -0.59
VPS28-214ENST00000531032 TRIM11Q96F44 468 aa11.36□□□□□ -0.59
VPS28-214ENST00000531032 NUDCD1Q96RS6 583 aa11.36□□□□□ -0.59
VPS28-214ENST00000531032 BPIFA3Q9BQP9 254 aa11.36□□□□□ -0.59
VPS28-214ENST00000531032 FRMD8Q9BZ67 464 aaPredicted RBP11.36□□□□□ -0.59
VPS28-214ENST00000531032 DPEP2Q9H4A9 486 aa11.36□□□□□ -0.59
VPS28-214ENST00000531032 TMEM63CQ9P1W3 806 aa11.36□□□□□ -0.59
VPS28-214ENST00000531032 PISDQ9UG56 409 aa11.36□□□□□ -0.59
VPS28-214ENST00000531032 PCDHGC4Q9Y5F7 938 aa11.36□□□□□ -0.59
VPS28-214ENST00000531032 PIEZO2Q9H5I5 2752 aa11.36□□□□□ -0.59
VPS28-214ENST00000531032 A0A1W2PQC6 194 aa11.35□□□□□ -0.59
VPS28-214ENST00000531032 TTC24A2A3L6 582 aaPredicted RBP11.35□□□□□ -0.59
VPS28-214ENST00000531032 SMTNL1A8MU46 457 aa11.35□□□□□ -0.59
VPS28-214ENST00000531032 PSMD11O00231 422 aa11.35□□□□□ -0.59
VPS28-214ENST00000531032 MAFKO60675 156 aa11.35□□□□□ -0.59
VPS28-214ENST00000531032 CPP00450 1065 aa11.35□□□□□ -0.59
VPS28-214ENST00000531032 FUCA1P04066 466 aa11.35□□□□□ -0.59
VPS28-214ENST00000531032 CEACAM5P06731 702 aa11.35□□□□□ -0.59
VPS28-214ENST00000531032 MYBL1P10243 752 aa11.35□□□□□ -0.59
VPS28-214ENST00000531032 CCNB1P14635 433 aa11.35□□□□□ -0.59
VPS28-214ENST00000531032 ITIH1P19827 911 aa11.35□□□□□ -0.59
VPS28-214ENST00000531032 LHCGRP22888 699 aa11.35□□□□□ -0.59
VPS28-214ENST00000531032 NFKBIAP25963 317 aa11.35□□□□□ -0.59
VPS28-214ENST00000531032 TEAD1P28347 426 aa11.35□□□□□ -0.59
VPS28-214ENST00000531032 ARL4AP40617 200 aa11.35□□□□□ -0.59
VPS28-214ENST00000531032 CDK3Q00526 305 aa11.35□□□□□ -0.59
VPS28-214ENST00000531032 B4GALNT1Q00973 533 aa11.35□□□□□ -0.59
VPS28-214ENST00000531032 KLHL30Q0D2K2 578 aa11.35□□□□□ -0.59
VPS28-214ENST00000531032 ARHGEF7Q14155 803 aa11.35□□□□□ -0.59
VPS28-214ENST00000531032 NR1D2Q14995 579 aa11.35□□□□□ -0.59
VPS28-214ENST00000531032 TGIF1Q15583 401 aa11.35□□□□□ -0.59
VPS28-214ENST00000531032 SMTNL2Q2TAL5 461 aa11.35□□□□□ -0.59
VPS28-214ENST00000531032 FILIP1LQ4L180 1135 aa11.35□□□□□ -0.59
VPS28-214ENST00000531032 RALGPS1Q5JS13 557 aa11.35□□□□□ -0.59
VPS28-214ENST00000531032 ZNF438Q7Z4V0 828 aa11.35□□□□□ -0.59
VPS28-214ENST00000531032 HEATR4Q86WZ0 1026 aa11.35□□□□□ -0.59
VPS28-214ENST00000531032 DTD2Q96FN9 168 aa11.35□□□□□ -0.59
VPS28-214ENST00000531032 CSPG4P5Q96PW8 444 aa11.35□□□□□ -0.59
VPS28-214ENST00000531032 MCCC1Q96RQ3 725 aaPredicted RBP11.35□□□□□ -0.59
VPS28-214ENST00000531032 CMKLR1Q99788 373 aa11.35□□□□□ -0.59
VPS28-214ENST00000531032 GSDMCQ9BYG8 508 aa11.35□□□□□ -0.59
VPS28-214ENST00000531032 ISCUQ9H1K1 167 aa11.35□□□□□ -0.59
VPS28-214ENST00000531032 CARS2Q9HA77 564 aaKnown RBP11.35□□□□□ -0.59
VPS28-214ENST00000531032 NOD2Q9HC29 1040 aa11.35□□□□□ -0.59
VPS28-214ENST00000531032 MRPL47Q9HD33 250 aaKnown RBP11.35□□□□□ -0.59
VPS28-214ENST00000531032 PHPT1Q9NRX4 125 aaPredicted RBP11.35□□□□□ -0.59
VPS28-214ENST00000531032 SPATS2LQ9NUQ6 558 aaKnown RBP11.35□□□□□ -0.59
VPS28-214ENST00000531032 ETNK2Q9NVF9 386 aa11.35□□□□□ -0.59
VPS28-214ENST00000531032 TRNAU1APQ9NX07 287 aaKnown RBP11.35□□□□□ -0.59
VPS28-214ENST00000531032 PRAMEF33A0A0G2JMD5 474 aa11.34□□□□□ -0.59
VPS28-214ENST00000531032 NPIPB15A6NHN6 443 aaPredicted RBP11.34□□□□□ -0.59
VPS28-214ENST00000531032 B4GAT1O43505 415 aa11.34□□□□□ -0.59
VPS28-214ENST00000531032 PRAMEF10O60809 474 aa11.34□□□□□ -0.59
VPS28-214ENST00000531032 CPNE6O95741 557 aa11.34□□□□□ -0.59
VPS28-214ENST00000531032 FGF1P05230 155 aa11.34□□□□□ -0.59
VPS28-214ENST00000531032 CYP2A6P11509 494 aaPredicted RBP11.34□□□□□ -0.59
VPS28-214ENST00000531032 TCF4P15884 667 aa11.34□□□□□ -0.59
VPS28-214ENST00000531032 AMPD1P23109 780 aa11.34□□□□□ -0.59
VPS28-214ENST00000531032 ETV5P41161 510 aa11.34□□□□□ -0.59
VPS28-214ENST00000531032 ETV3P41162 512 aa11.34□□□□□ -0.59
VPS28-214ENST00000531032 MAZP56270 477 aaKnown RBP11.34□□□□□ -0.59
VPS28-214ENST00000531032 ILF3Q12906 894 aaKnown RBP eCLIP11.34□□□□□ -0.59
VPS28-214ENST00000531032 TRAF2Q12933 501 aa11.34□□□□□ -0.59
VPS28-214ENST00000531032 SRSF6Q13247 344 aaKnown RBP11.34□□□□□ -0.59
VPS28-214ENST00000531032 CLPPQ16740 277 aaPredicted RBP11.34□□□□□ -0.59
VPS28-214ENST00000531032 MAP9Q49MG5 647 aa11.34□□□□□ -0.59
VPS28-214ENST00000531032 BOLA3Q53S33 107 aa11.34□□□□□ -0.59
VPS28-214ENST00000531032 HSD11B1LQ7Z5J1 315 aa11.34□□□□□ -0.59
VPS28-214ENST00000531032 BBS5Q8N3I7 341 aa11.34□□□□□ -0.59
VPS28-214ENST00000531032 ATPAF2Q8N5M1 289 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms