RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 CELA3AP09093 270 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 VAMP1P23763 118 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 ADRA1AP35348 466 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 RECQLP46063 649 aaPredicted RBP7.46□□□□□ -1.22
CD44-228ENST00000528455 SOX9P48436 509 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 NPY2RP49146 381 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 ST13P50502 369 aaKnown RBP7.46□□□□□ -1.22
CD44-228ENST00000528455 AP1S1P61966 158 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 POLR2LP62875 67 aaKnown RBP7.46□□□□□ -1.22
CD44-228ENST00000528455 MRPS25P82663 173 aaKnown RBP7.46□□□□□ -1.22
CD44-228ENST00000528455 NIPAL4Q0D2K0 466 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 MESP2Q0VG99 397 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 ZNF234Q14588 700 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 ANGPT1Q15389 498 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 HNRNPA1L2Q32P51 320 aaKnown RBP7.46□□□□□ -1.22
CD44-228ENST00000528455 RNASEH2BQ5TBB1 312 aaKnown RBP7.46□□□□□ -1.22
CD44-228ENST00000528455 PPP1R21Q6ZMI0 780 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 LEKR1Q6ZMV7 388 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 CEP128Q6ZU80 1094 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.46□□□□□ -1.22
CD44-228ENST00000528455 TRMT11Q7Z4G4 463 aaKnown RBP7.46□□□□□ -1.22
CD44-228ENST00000528455 PRUNE1Q86TP1 453 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 NAT8LQ8N9F0 302 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 TMIEQ8NEW7 156 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 PJA1Q8NG27 643 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 OR2A12Q8NGT7 310 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 STK35Q8TDR2 534 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 USP33Q8TEY7 942 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 CYB5D2Q8WUJ1 264 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 CPT1BQ92523 772 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 GDAP1L1Q96MZ0 367 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 ZNF641Q96N77 438 aaPredicted RBP7.46□□□□□ -1.22
CD44-228ENST00000528455 SEMA3CQ99985 751 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 HEPHQ9BQS7 1158 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 TRIM51Q9BSJ1 452 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 PARD6BQ9BYG5 372 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 OSBPL6Q9BZF3 934 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 TRIM31Q9BZY9 425 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 LRRC40Q9H9A6 602 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 NOD2Q9HC29 1040 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 GRHL1Q9NZI5 618 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 HECAQ9UBI9 543 aaPredicted RBP7.46□□□□□ -1.22
CD44-228ENST00000528455 LHX3Q9UBR4 397 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 RAB21Q9UL25 225 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 ACTL7AQ9Y615 435 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 COL4A2P08572 1712 aa7.46□□□□□ -1.22
CD44-228ENST00000528455 ATG2BQ96BY7 2078 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 EDDM13A0A1B0GTR0 161 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 FAM170BA6NMN3 283 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 TTC34A8MYJ7 566 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 CHURC1-FNTBB4DL54 471 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 ANKRD66B4E2M5 251 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 F8W735 103 aaPredicted RBP7.45□□□□□ -1.22
CD44-228ENST00000528455 ALOX15BO15296 676 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 EIF3HO15372 352 aaKnown RBP eCLIP7.45□□□□□ -1.22
CD44-228ENST00000528455 SOCS5O75159 536 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 PPFIA2O75334 1257 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 IGSF6O95976 241 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 DCNP07585 359 aaKnown RBP7.45□□□□□ -1.22
CD44-228ENST00000528455 CTSBP07858 339 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 CHRNB1P11230 501 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 CA4P22748 312 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 MAOBP27338 520 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 PSMB4P28070 264 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 NTSR1P30989 418 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 CD86P42081 329 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 LMAN1P49257 510 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 CARSP49589 748 aaKnown RBP7.45□□□□□ -1.22
CD44-228ENST00000528455 STK19P49842 368 aaPredicted RBP7.45□□□□□ -1.22
CD44-228ENST00000528455 ITGA8P53708 1063 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 PLTPP55058 493 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 MAXP61244 160 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 RPL26P61254 145 aaKnown RBP7.45□□□□□ -1.22
CD44-228ENST00000528455 BASP1P80723 227 aaKnown RBP7.45□□□□□ -1.22
CD44-228ENST00000528455 DSC2Q02487 901 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 KDSRQ06136 332 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 CDK18Q07002 472 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 BCL2L1Q07817 233 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 CAMK2GQ13555 558 aaPredicted RBP7.45□□□□□ -1.22
CD44-228ENST00000528455 IHHQ14623 411 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 KCNJ11Q14654 390 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 UBXN2BQ14CS0 331 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 PON2Q15165 354 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 POU4F3Q15319 338 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 TRADDQ15628 312 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 C9orf64Q5T6V5 341 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 EMC10Q5UCC4 262 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 IZUMO3Q5VZ72 239 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 NAPEPLDQ6IQ20 393 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 FSTL4Q6MZW2 842 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 LRRC8BQ6P9F7 803 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 SERPINA13PQ6UXR4 307 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 TPRG1Q6ZUI0 275 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 ACAD11Q709F0 780 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 RELL1Q8IUW5 271 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 NDUFAF2Q8N183 169 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 ZNF513Q8N8E2 541 aaPredicted RBP7.45□□□□□ -1.22
CD44-228ENST00000528455 SPATA22Q8NHS9 363 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 SORCS1Q8WY21 1168 aa7.45□□□□□ -1.22
CD44-228ENST00000528455 IFT81Q8WYA0 676 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms