RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 NFKBIAP25963 317 aa21.04■□□□□ 0.96
VPS28-208ENST00000527797 MPP1Q00013 466 aa21.04■□□□□ 0.96
VPS28-208ENST00000527797 PPARDQ03181 441 aa21.04■□□□□ 0.96
VPS28-208ENST00000527797 SMAD2Q15796 467 aaKnown RBP21.04■□□□□ 0.96
VPS28-208ENST00000527797 CDKN3Q16667 212 aa21.04■□□□□ 0.96
VPS28-208ENST00000527797 EGFLAMQ63HQ2 1017 aa21.04■□□□□ 0.96
VPS28-208ENST00000527797 FSTL4Q6MZW2 842 aa21.04■□□□□ 0.96
VPS28-208ENST00000527797 MRNIPQ6NTE8 343 aa21.04■□□□□ 0.96
VPS28-208ENST00000527797 ZC3HC1Q86WB0 502 aaKnown RBP21.04■□□□□ 0.96
VPS28-208ENST00000527797 GPR150Q8NGU9 434 aa21.04■□□□□ 0.96
VPS28-208ENST00000527797 MDM1Q8TC05 714 aa21.04■□□□□ 0.96
VPS28-208ENST00000527797 MCCC1Q96RQ3 725 aaPredicted RBP21.04■□□□□ 0.96
VPS28-208ENST00000527797 C19orf43Q9BQ61 176 aa21.04■□□□□ 0.96
VPS28-208ENST00000527797 RHOJQ9H4E5 214 aa21.04■□□□□ 0.96
VPS28-208ENST00000527797 BPIFA1Q9NP55 256 aa21.04■□□□□ 0.96
VPS28-208ENST00000527797 DKK3Q9UBP4 350 aa21.04■□□□□ 0.96
VPS28-208ENST00000527797 HCN2Q9UL51 889 aa21.04■□□□□ 0.96
VPS28-208ENST00000527797 NPIPB15A6NHN6 443 aaPredicted RBP21.03■□□□□ 0.96
VPS28-208ENST00000527797 CD3EAPO15446 510 aaKnown RBP21.03■□□□□ 0.96
VPS28-208ENST00000527797 PRPF4O43172 522 aaKnown RBP eCLIP21.03■□□□□ 0.96
VPS28-208ENST00000527797 RFPL1O75677 317 aa21.03■□□□□ 0.96
VPS28-208ENST00000527797 CLDN7O95471 211 aa21.03■□□□□ 0.96
VPS28-208ENST00000527797 PYGBP11216 843 aa21.03■□□□□ 0.96
VPS28-208ENST00000527797 GABRB3P28472 473 aa21.03■□□□□ 0.96
VPS28-208ENST00000527797 CTHP32929 405 aa21.03■□□□□ 0.96
VPS28-208ENST00000527797 IL12RB1P42701 662 aa21.03■□□□□ 0.96
VPS28-208ENST00000527797 SLC18A2Q05940 514 aa21.03■□□□□ 0.96
VPS28-208ENST00000527797 ELAVL3Q14576 367 aaKnown RBP21.03■□□□□ 0.96
VPS28-208ENST00000527797 LEXMQ3ZCV2 418 aa21.03■□□□□ 0.96
VPS28-208ENST00000527797 CRTC1Q6UUV9 634 aa21.03■□□□□ 0.96
VPS28-208ENST00000527797 GALNT7Q86SF2 657 aa21.03■□□□□ 0.96
VPS28-208ENST00000527797 SDCCAG8Q86SQ7 713 aaPredicted RBP21.03■□□□□ 0.96
VPS28-208ENST00000527797 CILP2Q8IUL8 1156 aa21.03■□□□□ 0.96
VPS28-208ENST00000527797 TMIEQ8NEW7 156 aa21.03■□□□□ 0.96
VPS28-208ENST00000527797 EID2BQ96D98 161 aa21.03■□□□□ 0.96
VPS28-208ENST00000527797 ATXN7L3BQ96GX2 97 aa21.03■□□□□ 0.96
VPS28-208ENST00000527797 VPS39Q96JC1 886 aa21.03■□□□□ 0.96
VPS28-208ENST00000527797 GUCD1Q96NT3 240 aa21.03■□□□□ 0.96
VPS28-208ENST00000527797 C8orf33Q9H7E9 229 aaPredicted RBP21.03■□□□□ 0.96
VPS28-208ENST00000527797 CATSPERZQ9NTU4 200 aa21.03■□□□□ 0.96
VPS28-208ENST00000527797 NKIRAS1Q9NYS0 192 aa21.03■□□□□ 0.96
VPS28-208ENST00000527797 FKBPLQ9UIM3 349 aa21.03■□□□□ 0.96
VPS28-208ENST00000527797 MTO1Q9Y2Z2 717 aaKnown RBP21.03■□□□□ 0.96
VPS28-208ENST00000527797 KIAA1549LQ6ZVL6 1849 aa21.03■□□□□ 0.96
VPS28-208ENST00000527797 FAM47DPA6NHR8 397 aa21.02■□□□□ 0.96
VPS28-208ENST00000527797 A6NNZ2 444 aa21.02■□□□□ 0.96
VPS28-208ENST00000527797 H7C0S8 307 aa21.02■□□□□ 0.96
VPS28-208ENST00000527797 NPC1O15118 1278 aa21.02■□□□□ 0.96
VPS28-208ENST00000527797 EPHX1P07099 455 aa21.02■□□□□ 0.96
VPS28-208ENST00000527797 CYP2A6P11509 494 aaPredicted RBP21.02■□□□□ 0.96
VPS28-208ENST00000527797 CHN1P15882 459 aa21.02■□□□□ 0.96
VPS28-208ENST00000527797 XPAP23025 273 aaPredicted RBP21.02■□□□□ 0.96
VPS28-208ENST00000527797 MDH1P40925 334 aaKnown RBP21.02■□□□□ 0.96
VPS28-208ENST00000527797 CD151P48509 253 aa21.02■□□□□ 0.96
VPS28-208ENST00000527797 TUBB8Q3ZCM7 444 aa21.02■□□□□ 0.96
VPS28-208ENST00000527797 FASTKD1Q53R41 847 aaKnown RBP21.02■□□□□ 0.96
VPS28-208ENST00000527797 SH2D5Q6ZV89 423 aa21.02■□□□□ 0.96
VPS28-208ENST00000527797 MICALCLQ6ZW33 695 aa21.02■□□□□ 0.96
VPS28-208ENST00000527797 RALGPS2Q86X27 583 aaPredicted RBP21.02■□□□□ 0.96
VPS28-208ENST00000527797 DCLK2Q8N568 766 aa21.02■□□□□ 0.96
VPS28-208ENST00000527797 DEFB123Q8N688 67 aa21.02■□□□□ 0.96
VPS28-208ENST00000527797 ANKRD42Q8N9B4 389 aa21.02■□□□□ 0.96
VPS28-208ENST00000527797 BANPQ8N9N5 519 aa21.02■□□□□ 0.96
VPS28-208ENST00000527797 DNASE1L2Q92874 299 aa21.02■□□□□ 0.96
VPS28-208ENST00000527797 SGSM3Q96HU1 749 aa21.02■□□□□ 0.96
VPS28-208ENST00000527797 ACOX2Q99424 681 aa21.02■□□□□ 0.96
VPS28-208ENST00000527797 CAPS2Q9BXY5 557 aa21.02■□□□□ 0.96
VPS28-208ENST00000527797 MARCH4Q9P2E8 410 aaPredicted RBP21.02■□□□□ 0.96
VPS28-208ENST00000527797 A8MX80 341 aa21.01■□□□□ 0.95
VPS28-208ENST00000527797 TYROBPO43914 113 aa21.01■□□□□ 0.95
VPS28-208ENST00000527797 OGNP20774 298 aaKnown RBP21.01■□□□□ 0.95
VPS28-208ENST00000527797 ABCG1P45844 678 aa21.01■□□□□ 0.95
VPS28-208ENST00000527797 LEPRP48357 1165 aaKnown RBP21.01■□□□□ 0.95
VPS28-208ENST00000527797 SLC18A1P54219 525 aa21.01■□□□□ 0.95
VPS28-208ENST00000527797 ILF2Q12905 390 aaKnown RBP21.01■□□□□ 0.95
VPS28-208ENST00000527797 DSG4Q86SJ6 1040 aa21.01■□□□□ 0.95
VPS28-208ENST00000527797 ACMSDQ8TDX5 336 aa21.01■□□□□ 0.95
VPS28-208ENST00000527797 FBXO6Q9NRD1 293 aaPredicted RBP21.01■□□□□ 0.95
VPS28-208ENST00000527797 CACNA2D2Q9NY47 1150 aa21.01■□□□□ 0.95
VPS28-208ENST00000527797 PPM1HQ9ULR3 514 aa21.01■□□□□ 0.95
VPS28-208ENST00000527797 STON1Q9Y6Q2 735 aa21.01■□□□□ 0.95
VPS28-208ENST00000527797 PIAS3Q9Y6X2 628 aa21.01■□□□□ 0.95
VPS28-208ENST00000527797 ANKRD36A6QL64 1941 aa21.01■□□□□ 0.95
VPS28-208ENST00000527797 UPK3BL1B0FP48 263 aa21■□□□□ 0.95
VPS28-208ENST00000527797 UPK3BL2E5RIL1 263 aa21■□□□□ 0.95
VPS28-208ENST00000527797 K7EQS6 105 aa21■□□□□ 0.95
VPS28-208ENST00000527797 KPNA3O00505 521 aaPredicted RBP21■□□□□ 0.95
VPS28-208ENST00000527797 TPP1O14773 563 aa21■□□□□ 0.95
VPS28-208ENST00000527797 HAUS5O94927 633 aa21■□□□□ 0.95
VPS28-208ENST00000527797 ALDOAP04075 364 aaKnown RBP21■□□□□ 0.95
VPS28-208ENST00000527797 TIMP2P16035 220 aa21■□□□□ 0.95
VPS28-208ENST00000527797 MC4RP32245 332 aa21■□□□□ 0.95
VPS28-208ENST00000527797 CCNFP41002 786 aa21■□□□□ 0.95
VPS28-208ENST00000527797 POLD2P49005 469 aa21■□□□□ 0.95
VPS28-208ENST00000527797 SERPINB8P50452 374 aa21■□□□□ 0.95
VPS28-208ENST00000527797 GUCY1A3Q02108 690 aa21■□□□□ 0.95
VPS28-208ENST00000527797 MPP2Q14168 576 aa21■□□□□ 0.95
VPS28-208ENST00000527797 TXNDC11Q6PKC3 985 aa21■□□□□ 0.95
VPS28-208ENST00000527797 TTC7BQ86TV6 843 aa21■□□□□ 0.95
VPS28-208ENST00000527797 TSPAN33Q86UF1 283 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms