RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 TXLNBQ8N3L3 684 aa20.63■□□□□ 0.89
VPS28-206ENST00000526734 NAT6Q93015 286 aa20.63■□□□□ 0.89
VPS28-206ENST00000526734 FUBP1Q96AE4 644 aaKnown RBP20.63■□□□□ 0.89
VPS28-206ENST00000526734 LYSMD1Q96S90 227 aa20.63■□□□□ 0.89
VPS28-206ENST00000526734 BOCQ9BWV1 1114 aa20.63■□□□□ 0.89
VPS28-206ENST00000526734 TCEAL2Q9H3H9 227 aaPredicted RBP20.63■□□□□ 0.89
VPS28-206ENST00000526734 PCDH9Q9HC56 1237 aa20.63■□□□□ 0.89
VPS28-206ENST00000526734 PNMA8BQ9ULN7 279 aaPredicted RBP20.63■□□□□ 0.89
VPS28-206ENST00000526734 DOLKQ9UPQ8 538 aa20.63■□□□□ 0.89
VPS28-206ENST00000526734 HYOU1Q9Y4L1 999 aa20.63■□□□□ 0.89
VPS28-206ENST00000526734 PTPRBP23467 1997 aa20.63■□□□□ 0.89
VPS28-206ENST00000526734 LY6G6EA0A0G2JKS1 128 aa20.62■□□□□ 0.89
VPS28-206ENST00000526734 KCNK1O00180 336 aa20.62■□□□□ 0.89
VPS28-206ENST00000526734 MTSS1O43312 755 aa20.62■□□□□ 0.89
VPS28-206ENST00000526734 GCATO75600 419 aa20.62■□□□□ 0.89
VPS28-206ENST00000526734 ZRANB2O95218 330 aaKnown RBP eCLIP20.62■□□□□ 0.89
VPS28-206ENST00000526734 PDHA1P08559 390 aa20.62■□□□□ 0.89
VPS28-206ENST00000526734 MYCLP1P12525 358 aaPredicted RBP20.62■□□□□ 0.89
VPS28-206ENST00000526734 CDC25BP30305 580 aa20.62■□□□□ 0.89
VPS28-206ENST00000526734 DPTQ07507 201 aa20.62■□□□□ 0.89
VPS28-206ENST00000526734 AP1B1Q10567 949 aa20.62■□□□□ 0.89
VPS28-206ENST00000526734 TFDP3Q5H9I0 405 aa20.62■□□□□ 0.89
VPS28-206ENST00000526734 SPOCD1Q6ZMY3 1216 aa20.62■□□□□ 0.89
VPS28-206ENST00000526734 NLRP8Q86W28 1048 aa20.62■□□□□ 0.89
VPS28-206ENST00000526734 GAS2L3Q86XJ1 694 aa20.62■□□□□ 0.89
VPS28-206ENST00000526734 RCOR2Q8IZ40 523 aa20.62■□□□□ 0.89
VPS28-206ENST00000526734 NXPE2Q96DL1 559 aa20.62■□□□□ 0.89
VPS28-206ENST00000526734 RBM15Q96T37 977 aaKnown RBP eCLIP20.62■□□□□ 0.89
VPS28-206ENST00000526734 ADGRE3Q9BY15 652 aa20.62■□□□□ 0.89
VPS28-206ENST00000526734 IMPACTQ9P2X3 320 aa20.62■□□□□ 0.89
VPS28-206ENST00000526734 U3KQA8 63 aa20.62■□□□□ 0.89
VPS28-206ENST00000526734 SHROOM3Q8TF72 1996 aa20.62■□□□□ 0.89
VPS28-206ENST00000526734 USP24Q9UPU5 2620 aa20.61■□□□□ 0.89
VPS28-206ENST00000526734 IGF2RP11717 2491 aa20.61■□□□□ 0.89
VPS28-206ENST00000526734 EME2A4GXA9 379 aaPredicted RBP20.61■□□□□ 0.89
VPS28-206ENST00000526734 SOWAHDA6NJG2 315 aa20.61■□□□□ 0.89
VPS28-206ENST00000526734 CAPNS1P04632 268 aa20.61■□□□□ 0.89
VPS28-206ENST00000526734 CTPS1P17812 591 aa20.61■□□□□ 0.89
VPS28-206ENST00000526734 INSM1Q01101 510 aaPredicted RBP20.61■□□□□ 0.89
VPS28-206ENST00000526734 NIPAL4Q0D2K0 466 aa20.61■□□□□ 0.89
VPS28-206ENST00000526734 ZBTB17Q13105 803 aa20.61■□□□□ 0.89
VPS28-206ENST00000526734 C1orf61Q13536 156 aa20.61■□□□□ 0.89
VPS28-206ENST00000526734 HSD11B1LQ7Z5J1 315 aa20.61■□□□□ 0.89
VPS28-206ENST00000526734 DAAM2Q86T65 1068 aa20.61■□□□□ 0.89
VPS28-206ENST00000526734 PROSER1Q86XN7 944 aa20.61■□□□□ 0.89
VPS28-206ENST00000526734 DCBLD1Q8N8Z6 715 aa20.61■□□□□ 0.89
VPS28-206ENST00000526734 EXD1Q8NHP7 514 aa20.61■□□□□ 0.89
VPS28-206ENST00000526734 WDR48Q8TAF3 677 aa20.61■□□□□ 0.89
VPS28-206ENST00000526734 TSACCQ96A04 125 aaPredicted RBP20.61■□□□□ 0.89
VPS28-206ENST00000526734 TEX101Q9BY14 249 aa20.61■□□□□ 0.89
VPS28-206ENST00000526734 CLPBQ9H078 707 aa20.61■□□□□ 0.89
VPS28-206ENST00000526734 CLCA2Q9UQC9 943 aa20.61■□□□□ 0.89
VPS28-206ENST00000526734 CHKBQ9Y259 395 aa20.61■□□□□ 0.89
VPS28-206ENST00000526734 LRRK1Q38SD2 2015 aa20.61■□□□□ 0.89
VPS28-206ENST00000526734 FAM149AA5PLN7 773 aa20.6■□□□□ 0.89
VPS28-206ENST00000526734 TRABD2BA6NFA1 517 aa20.6■□□□□ 0.89
VPS28-206ENST00000526734 YY2O15391 372 aa20.6■□□□□ 0.89
VPS28-206ENST00000526734 OPA1O60313 960 aa20.6■□□□□ 0.89
VPS28-206ENST00000526734 CST8O60676 142 aa20.6■□□□□ 0.89
VPS28-206ENST00000526734 ETV3P41162 512 aa20.6■□□□□ 0.89
VPS28-206ENST00000526734 CD86P42081 329 aa20.6■□□□□ 0.89
VPS28-206ENST00000526734 COPS2P61201 443 aa20.6■□□□□ 0.89
VPS28-206ENST00000526734 DYNLT1P63172 113 aa20.6■□□□□ 0.89
VPS28-206ENST00000526734 PPP2R5EQ16537 467 aa20.6■□□□□ 0.89
VPS28-206ENST00000526734 LRRC66Q68CR7 880 aa20.6■□□□□ 0.89
VPS28-206ENST00000526734 DENND2CQ68D51 928 aa20.6■□□□□ 0.89
VPS28-206ENST00000526734 CRTC1Q6UUV9 634 aa20.6■□□□□ 0.89
VPS28-206ENST00000526734 Q6ZVL8 140 aa20.6■□□□□ 0.89
VPS28-206ENST00000526734 TECPR1Q7Z6L1 1165 aa20.6■□□□□ 0.89
VPS28-206ENST00000526734 TSPAN33Q86UF1 283 aa20.6■□□□□ 0.89
VPS28-206ENST00000526734 NRSN1Q8IZ57 195 aa20.6■□□□□ 0.89
VPS28-206ENST00000526734 CNTD1Q8N815 330 aa20.6■□□□□ 0.89
VPS28-206ENST00000526734 ARL10Q8N8L6 244 aa20.6■□□□□ 0.89
VPS28-206ENST00000526734 LPCAT1Q8NF37 534 aa20.6■□□□□ 0.89
VPS28-206ENST00000526734 IFI44Q8TCB0 444 aa20.6■□□□□ 0.89
VPS28-206ENST00000526734 OR1E3Q8WZA6 343 aa20.6■□□□□ 0.89
VPS28-206ENST00000526734 PDXPQ96GD0 296 aa20.6■□□□□ 0.89
VPS28-206ENST00000526734 NRSN2Q9GZP1 204 aa20.6■□□□□ 0.89
VPS28-206ENST00000526734 FGF22Q9HCT0 170 aa20.6■□□□□ 0.89
VPS28-206ENST00000526734 CACNA1BQ00975 2339 aa20.6■□□□□ 0.89
VPS28-206ENST00000526734 KMT2BQ9UMN6 2715 aaPredicted RBP20.59■□□□□ 0.89
VPS28-206ENST00000526734 hCG_1818297A0A087WSY0 165 aa20.59■□□□□ 0.89
VPS28-206ENST00000526734 TMEM202A6NGA9 273 aa20.59■□□□□ 0.89
VPS28-206ENST00000526734 GOLGA6L6A8MZA4 724 aa20.59■□□□□ 0.89
VPS28-206ENST00000526734 MT-CO3P00414 261 aa20.59■□□□□ 0.89
VPS28-206ENST00000526734 PRLP01236 227 aa20.59■□□□□ 0.89
VPS28-206ENST00000526734 STC1P52823 247 aa20.59■□□□□ 0.89
VPS28-206ENST00000526734 SKOR1P84550 965 aa20.59■□□□□ 0.89
VPS28-206ENST00000526734 TARDBPQ13148 414 aaKnown RBP eCLIP20.59■□□□□ 0.89
VPS28-206ENST00000526734 PRKD1Q15139 912 aaPredicted RBP20.59■□□□□ 0.89
VPS28-206ENST00000526734 RAET1GQ6H3X3 334 aa20.59■□□□□ 0.89
VPS28-206ENST00000526734 NPNTQ6UXI9 565 aa20.59■□□□□ 0.89
VPS28-206ENST00000526734 RD3Q7Z3Z2 195 aa20.59■□□□□ 0.89
VPS28-206ENST00000526734 NT5DC3Q86UY8 548 aa20.59■□□□□ 0.89
VPS28-206ENST00000526734 HEATR4Q86WZ0 1026 aa20.59■□□□□ 0.89
VPS28-206ENST00000526734 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP20.59■□□□□ 0.89
VPS28-206ENST00000526734 OR6C4Q8NGE1 309 aa20.59■□□□□ 0.89
VPS28-206ENST00000526734 TFB1MQ8WVM0 346 aaKnown RBP20.59■□□□□ 0.89
VPS28-206ENST00000526734 P3H4Q92791 437 aa20.59■□□□□ 0.89
VPS28-206ENST00000526734 IMP4Q96G21 291 aaKnown RBP20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms