RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 CD68P34810 354 aaPredicted RBP12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 DAB2P98082 770 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 TAP1Q03518 808 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 ZNF33BQ06732 778 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 BAATQ14032 418 aaPredicted RBP12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 NDUFAF5Q5TEU4 345 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 USP51Q70EK9 711 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 SPRED1Q7Z699 444 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 CCNYL1Q8N7R7 359 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 OR10Z1Q8NGY1 313 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 UBASH3BQ8TF42 649 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 ANKRD49Q8WVL7 239 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 DPEP3Q9H4B8 488 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 EHD3Q9NZN3 535 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 CD300AQ9UGN4 299 aa12.07□□□□□ -0.48
LIMCH1-213ENST00000511496 AGAP5A6NIR3 686 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 ITGALP20701 1170 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 PROZP22891 400 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 GNA15P30679 374 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 CDK8P49336 464 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 ETV1P50549 477 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 GPR85P60893 370 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 ALDH6A1Q02252 535 aaKnown RBP12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 POU5F1BQ06416 359 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 AP3B2Q13367 1082 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 CES3Q6UWW8 571 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 TIFABQ6ZNK6 161 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 METTL3Q86U44 580 aaKnown RBP12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 STK32CQ86UX6 486 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 WDR49Q8IV35 697 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 LILRB2Q8N423 598 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 PARP16Q8N5Y8 322 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 FBXW5Q969U6 566 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 REXO5Q96IC2 774 aaKnown RBP12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 C1orf112Q9NSG2 853 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 RAP2CQ9Y3L5 183 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 hCG_1984214I3L0E3 225 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 CHADO15335 359 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 XPNPEP2O43895 674 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 CALB1P05937 261 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 GRIA4P48058 902 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 KRR1Q13601 381 aaKnown RBP12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 C6orf141Q5SZD1 244 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 STXBP5Q5T5C0 1151 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 GARNL3Q5VVW2 1013 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 LINC00299Q6ZSB3 139 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 SV2AQ7L0J3 742 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 LURAP1LQ8IV03 231 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 CDKL2Q92772 493 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 TMEM80Q96HE8 168 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 LRCH3Q96II8 777 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 RIPOR3Q96MK2 946 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 ASB2Q96Q27 587 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 TRIM15Q9C019 465 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 IFT22Q9H7X7 185 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 CAB39LQ9H9S4 337 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 BRD7Q9NPI1 651 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 SNX15Q9NRS6 342 aa12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 SCAF8Q9UPN6 1271 aaKnown RBP12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 ZNF335Q9H4Z2 1342 aaPredicted RBP12.06□□□□□ -0.48
LIMCH1-213ENST00000511496 DLEC1Q9Y238 1755 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 WDR27A2RRH5 827 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 CCDC154A6NI56 674 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 C6orf229H3BNL8 230 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 TOR1AO14656 332 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 LDLRP01130 860 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 CYP3A4P08684 503 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 KRT19P08727 400 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 NCK1P16333 377 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 PSMA2P25787 234 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 IRF9Q00978 393 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 EMX1Q04741 257 aaPredicted RBP12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 SEMA3AQ14563 771 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 SNRNP35Q16560 246 aaKnown RBP12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 ZNF404Q494X3 552 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 BRDTQ58F21 947 aaPredicted RBP12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 TPRG1LQ5T0D9 272 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 SULT1C3Q6IMI6 304 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 TXNRD3Q86VQ6 643 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 RAB43Q86YS6 212 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 TRIM48Q8IWZ4 208 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 LINC00518Q8N0U6 118 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 DUS3LQ96G46 650 aaKnown RBP12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 FAM84BQ96KN1 310 aaPredicted RBP12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 EBNA1BP2Q99848 306 aaKnown RBP12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 IER2Q9BTL4 223 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 SMOC2Q9H3U7 446 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 NECTIN3Q9NQS3 549 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 PLCH1Q4KWH8 1693 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 OR5K4A6NMS3 321 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 MSH4O15457 936 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 DNTTP04053 509 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 STMN1P16949 149 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 TGM2P21980 687 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 KDELR1P24390 212 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 GLRBP48167 497 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 NDST1P52848 882 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 PGGT1BP53609 377 aa12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 RBM48Q5RL73 367 aaKnown RBP12.05□□□□□ -0.48
LIMCH1-213ENST00000511496 PPP1R26Q5T8A7 1209 aaPredicted RBP12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms