RNA–Protein interactions for RNA: ENST00000511439.5

TOPBP1-208, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 5

Gene TOPBP1, Length 1,142 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-208ENST00000511439 COG8Q96MW5 612 aa3.84□□□□□ -1.79
TOPBP1-208ENST00000511439 HERC2P3Q9BVR0 1158 aa3.84□□□□□ -1.79
TOPBP1-208ENST00000511439 HDHD5Q9BXW7 423 aa3.84□□□□□ -1.79
TOPBP1-208ENST00000511439 RMI1Q9H9A7 625 aa3.84□□□□□ -1.79
TOPBP1-208ENST00000511439 NOD2Q9HC29 1040 aa3.84□□□□□ -1.79
TOPBP1-208ENST00000511439 MTPAPQ9NVV4 582 aaKnown RBP eCLIP3.84□□□□□ -1.79
TOPBP1-208ENST00000511439 FRMD4AQ9P2Q2 1039 aaPredicted RBP3.84□□□□□ -1.79
TOPBP1-208ENST00000511439 PI4KBQ9UBF8 816 aa3.84□□□□□ -1.79
TOPBP1-208ENST00000511439 DNAJC16Q9Y2G8 782 aa3.84□□□□□ -1.79
TOPBP1-208ENST00000511439 IGSF10Q6WRI0 2623 aa3.84□□□□□ -1.8
TOPBP1-208ENST00000511439 ITPR1Q14643 2758 aa3.84□□□□□ -1.8
TOPBP1-208ENST00000511439 DOCK2Q92608 1830 aa3.84□□□□□ -1.8
TOPBP1-208ENST00000511439 SPEF2Q9C093 1822 aa3.84□□□□□ -1.8
TOPBP1-208ENST00000511439 SAC3D1A6NKF1 404 aa3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 C2CD4BA6NLJ0 364 aa3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 STX16-NPEPL1H3BU86 382 aa3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 STX16O14662 325 aa3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 LINC01565O15544 149 aa3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 STRNO43815 780 aa3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 PYGLP06737 847 aa3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 CNPP09543 421 aaKnown RBP3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 HOXB9P17482 250 aaPredicted RBP3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 TFEBP19484 476 aa3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 STIM1Q13586 685 aa3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 ALKBH1Q13686 389 aaKnown RBP3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 THOC5Q13769 683 aaKnown RBP3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 SEMA3AQ14563 771 aa3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 TAF7Q15545 349 aaPredicted RBP3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 KRTAP21-3Q3LHN1 58 aa3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 ZNF528Q3MIS6 628 aa3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 APOBEC3HQ6NTF7 200 aaKnown RBP3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 MTFR2Q6P444 385 aa3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 LVRNQ6Q4G3 990 aa3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 SHC4Q6S5L8 630 aa3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 DEF8Q6ZN54 512 aa3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 TMCO2Q7Z6W1 182 aaPredicted RBP3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 LRRTM4Q86VH4 590 aa3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 TMEM200AQ86VY9 491 aa3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 FAM47BQ8NA70 645 aa3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 USP13Q92995 863 aaPredicted RBP3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 EVI5LQ96CN4 794 aa3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 TBATAQ96M53 351 aa3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 ADAD1Q96M93 576 aaKnown RBP3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 NEK1Q96PY6 1258 aa3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 SIGLEC11Q96RL6 698 aa3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 TWNKQ96RR1 684 aa3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 MPHOSPH8Q99549 860 aa3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 CLPBQ9H078 707 aa3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 LMAN2LQ9H0V9 348 aa3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 SIL1Q9H173 461 aa3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 MOV10Q9HCE1 1003 aaKnown RBP3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 C9orf78Q9NZ63 289 aaPredicted RBP3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 ZNF580Q9UK33 172 aa3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 DTX4Q9Y2E6 619 aa3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 PKP3Q9Y446 797 aa3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 CNTNAP2Q9UHC6 1331 aa3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 C2CD3Q4AC94 2353 aa3.83□□□□□ -1.8
TOPBP1-208ENST00000511439 DSPP15924 2871 aaKnown RBP3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 TEX15Q9BXT5 2789 aa3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 CLSPNQ9HAW4 1339 aa3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 MAPK8IP3Q9UPT6 1336 aa3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 FAM90A10PA6NDY2 464 aa3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 CNMDO75829 334 aa3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 CABYRO75952 493 aa3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 OAZ2O95190 189 aa3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 KCNK5O95279 499 aa3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 SUPT20HL2P0C7V6 817 aa3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 CTSAP10619 480 aa3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 LYL1P12980 280 aa3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 PKMP14618 531 aaKnown RBP3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 LIMK1P53667 647 aa3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 RPS13P62277 151 aaKnown RBP3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 DEFB103AP81534 67 aa3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 CHRNDQ07001 517 aa3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 SLC12A1Q13621 1099 aa3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 PGM5Q15124 567 aa3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 ANKRD1Q15327 319 aa3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 CCDC6Q16204 474 aa3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 ALFQ53S48 1182 aa3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 KIAA1755Q5JYT7 1200 aa3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 CBWD5Q5RIA9 395 aa3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 RUSC1-AS1Q66K80 236 aa3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 BBS12Q6ZW61 710 aa3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 SCN4BQ8IWT1 228 aa3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 LINS1Q8NG48 757 aa3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 FAM110DQ8TAY7 271 aaPredicted RBP3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 TBC1D22AQ8WUA7 517 aa3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 SUSD6Q92537 303 aa3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 KCNJ9Q92806 393 aa3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 MAELQ96JY0 434 aaKnown RBP3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 TRIM31Q9BZY9 425 aa3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 IL21RQ9HBE5 538 aa3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 TMEM160Q9NX00 188 aa3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 MIS18AQ9NYP9 233 aa3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 WWOXQ9NZC7 414 aa3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 PDP2Q9P2J9 529 aa3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 KLQ9UEF7 1012 aa3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 IPO11Q9UI26 975 aaKnown RBP3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 RAB23Q9ULC3 237 aa3.82□□□□□ -1.8
TOPBP1-208ENST00000511439 CNPY2Q9Y2B0 182 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 91.8 ms