RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 ZBTB7BO15156 539 aaPredicted RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 FKTNO75072 461 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 TM7SF2O76062 418 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 CYP1A2P05177 515 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 BPGMP07738 259 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 ETS1P14921 441 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 MAPK3P27361 379 aaPredicted RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 CHRNA5P30532 468 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 NOS2P35228 1153 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 UGT1A5P35504 534 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 SOAT1P35610 550 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 TXKP42681 527 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 SLC15A1P46059 708 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 BCAR1P56945 870 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 CYCSP99999 105 aaKnown RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 PPARDQ03181 441 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 ADAM15Q13444 863 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 LRRC14Q15048 493 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 PDK1Q15118 436 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 RFTN2Q52LD8 501 aaPredicted RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 KLHL22Q53GT1 634 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 RAB41Q5JT25 222 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 CDKL4Q5MAI5 379 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 FBXO47Q5MNV8 452 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 GPR107Q5VW38 600 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 C11orf63Q6NUN7 778 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 PGM2L1Q6PCE3 622 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 KDELC1Q6UW63 502 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 ARSKQ6UWY0 536 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 TMC7Q7Z402 723 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 MTDHQ86UE4 582 aaKnown RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 CNTD1Q8N815 330 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 PNMA1Q8ND90 353 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 OR52L1Q8NGH7 329 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 ST7LQ8TDW4 575 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 MALSU1Q96EH3 234 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 DYNLL2Q96FJ2 89 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 PAGE5Q96GU1 130 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 OR2M4Q96R27 311 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 ERGIC2Q96RQ1 377 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 RAD9AQ99638 391 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 TM9SF2Q99805 663 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 COPS4Q9BT78 406 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 ZNF471Q9BX82 626 aaPredicted RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 PRKD2Q9BZL6 878 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 BHLHE41Q9C0J9 482 aaPredicted RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 SENP6Q9GZR1 1112 aaPredicted RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 TPT1P8Q9HAU6 139 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 LYARQ9NX58 379 aaKnown RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 EIF3KQ9UBQ5 218 aaKnown RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 CD300AQ9UGN4 299 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 CYB5R1Q9UHQ9 305 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 ZNF639Q9UID6 485 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 PNMA8BQ9ULN7 279 aaPredicted RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 FAM50BQ9Y247 325 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 LRRC42Q9Y546 428 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 LMO7Q8WWI1 1683 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 TRPM3Q9HCF6 1732 aaPredicted RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 NAP1L6A6NFF2 107 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 B4E1Z4 1266 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 DDX3XO00571 662 aaKnown RBP eCLIP3.58□□□□□ -1.84
USP53-205ENST00000509769 EIF1AYO14602 144 aaKnown RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 MRASO14807 208 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 PRODHO43272 600 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 PLOD3O60568 738 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 AKAP3O75969 853 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 KCNK2O95069 426 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 OR5F1O95221 314 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 RAB3DO95716 219 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 GKN3PP0CG01 181 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 EPHX2P34913 555 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 EIF1AXP47813 144 aaKnown RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 DHPSP49366 369 aaPredicted RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 SEC24CP53992 1094 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 MPP1Q00013 466 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 MERTKQ12866 999 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 GTF2H3Q13889 308 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 SELPLGQ14242 412 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 CCNG2Q16589 344 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 PDK4Q16654 411 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 PTCHD3Q3KNS1 767 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 ASPRV1Q53RT3 343 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 TMEM41BQ5BJD5 291 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 SLC39A4Q6P5W5 647 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 PAPD4Q6PIY7 484 aaKnown RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 SLC22A25Q6T423 547 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 RAD9BQ6WBX8 426 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 SLC36A4Q6YBV0 504 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 OAFQ86UD1 273 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 FAM228AQ86W67 206 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 DNAJC10Q8IXB1 793 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 CCNYQ8ND76 341 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 ADPRHL1Q8NDY3 354 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 HAVCR2Q8TDQ0 301 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 SETD7Q8WTS6 366 aaKnown RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 CHURC1Q8WUH1 139 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 SLC20A1Q8WUM9 679 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 SKA2Q8WVK7 121 aaPredicted RBP3.58□□□□□ -1.84
USP53-205ENST00000509769 ASB13Q8WXK3 278 aa3.58□□□□□ -1.84
USP53-205ENST00000509769 COL26A1Q96A83 441 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms