RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 TMEM74Q96NL1 305 aa11.56□□□□□ -0.56
HMGCS1-204ENST00000507293 NAP1L5Q96NT1 182 aaPredicted RBP11.56□□□□□ -0.56
HMGCS1-204ENST00000507293 CSPG4P5Q96PW8 444 aa11.56□□□□□ -0.56
HMGCS1-204ENST00000507293 NUDCD1Q96RS6 583 aa11.56□□□□□ -0.56
HMGCS1-204ENST00000507293 DPEP2Q9H4A9 486 aa11.56□□□□□ -0.56
HMGCS1-204ENST00000507293 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.56□□□□□ -0.56
HMGCS1-204ENST00000507293 ETNK2Q9NVF9 386 aa11.56□□□□□ -0.56
HMGCS1-204ENST00000507293 WDR70Q9NW82 654 aa11.56□□□□□ -0.56
HMGCS1-204ENST00000507293 PISDQ9UG56 409 aa11.56□□□□□ -0.56
HMGCS1-204ENST00000507293 RNF215Q9Y6U7 377 aa11.56□□□□□ -0.56
HMGCS1-204ENST00000507293 GCN1Q92616 2671 aaKnown RBP11.56□□□□□ -0.56
HMGCS1-204ENST00000507293 A0A1W2PQ67 120 aa11.55□□□□□ -0.56
HMGCS1-204ENST00000507293 AGRPO00253 132 aa11.55□□□□□ -0.56
HMGCS1-204ENST00000507293 PDE2AO00408 941 aaPredicted RBP11.55□□□□□ -0.56
HMGCS1-204ENST00000507293 MAFKO60675 156 aa11.55□□□□□ -0.56
HMGCS1-204ENST00000507293 SOCS5O75159 536 aa11.55□□□□□ -0.56
HMGCS1-204ENST00000507293 HEXIM1O94992 359 aaKnown RBP11.55□□□□□ -0.56
HMGCS1-204ENST00000507293 RARAP10276 462 aa11.55□□□□□ -0.56
HMGCS1-204ENST00000507293 LHCGRP22888 699 aa11.55□□□□□ -0.56
HMGCS1-204ENST00000507293 HSPA9P38646 679 aaKnown RBP11.55□□□□□ -0.56
HMGCS1-204ENST00000507293 TRAF2Q12933 501 aa11.55□□□□□ -0.56
HMGCS1-204ENST00000507293 LY6DQ14210 128 aa11.55□□□□□ -0.56
HMGCS1-204ENST00000507293 HLTFQ14527 1009 aaKnown RBP eCLIP11.55□□□□□ -0.56
HMGCS1-204ENST00000507293 TSR1Q2NL82 804 aaKnown RBP11.55□□□□□ -0.56
HMGCS1-204ENST00000507293 TDRD12Q587J7 1177 aaKnown RBP11.55□□□□□ -0.56
HMGCS1-204ENST00000507293 TXNRD3NBQ6F5E7 133 aa11.55□□□□□ -0.56
HMGCS1-204ENST00000507293 HSD11B1LQ7Z5J1 315 aa11.55□□□□□ -0.56
HMGCS1-204ENST00000507293 POLNQ7Z5Q5 900 aa11.55□□□□□ -0.56
HMGCS1-204ENST00000507293 ZNF605Q86T29 641 aa11.55□□□□□ -0.56
HMGCS1-204ENST00000507293 HEATR4Q86WZ0 1026 aa11.55□□□□□ -0.56
HMGCS1-204ENST00000507293 BBS5Q8N3I7 341 aa11.55□□□□□ -0.56
HMGCS1-204ENST00000507293 ATPAF2Q8N5M1 289 aa11.55□□□□□ -0.56
HMGCS1-204ENST00000507293 SPOCK2Q92563 424 aa11.55□□□□□ -0.56
HMGCS1-204ENST00000507293 MGME1Q9BQP7 344 aa11.55□□□□□ -0.56
HMGCS1-204ENST00000507293 SEMA4CQ9C0C4 833 aa11.55□□□□□ -0.56
HMGCS1-204ENST00000507293 ISCUQ9H1K1 167 aa11.55□□□□□ -0.56
HMGCS1-204ENST00000507293 CARS2Q9HA77 564 aaKnown RBP11.55□□□□□ -0.56
HMGCS1-204ENST00000507293 NOD2Q9HC29 1040 aa11.55□□□□□ -0.56
HMGCS1-204ENST00000507293 PHPT1Q9NRX4 125 aaPredicted RBP11.55□□□□□ -0.56
HMGCS1-204ENST00000507293 LRIT1Q9P2V4 623 aa11.55□□□□□ -0.56
HMGCS1-204ENST00000507293 APPL1Q9UKG1 709 aa11.55□□□□□ -0.56
HMGCS1-204ENST00000507293 LOXL2Q9Y4K0 774 aa11.55□□□□□ -0.56
HMGCS1-204ENST00000507293 PCDHGA7Q9Y5G6 932 aa11.55□□□□□ -0.56
HMGCS1-204ENST00000507293 GOLGA6CA6NDK9 693 aa11.54□□□□□ -0.56
HMGCS1-204ENST00000507293 GOLGA6BA6NDN3 693 aa11.54□□□□□ -0.56
HMGCS1-204ENST00000507293 NPIPB15A6NHN6 443 aaPredicted RBP11.54□□□□□ -0.56
HMGCS1-204ENST00000507293 JMJD7P0C870 316 aa11.54□□□□□ -0.56
HMGCS1-204ENST00000507293 GOLGA6DP0CG33 693 aa11.54□□□□□ -0.56
HMGCS1-204ENST00000507293 CYP2A6P11509 494 aaPredicted RBP11.54□□□□□ -0.56
HMGCS1-204ENST00000507293 PNLIPP16233 465 aa11.54□□□□□ -0.56
HMGCS1-204ENST00000507293 ITIH1P19827 911 aa11.54□□□□□ -0.56
HMGCS1-204ENST00000507293 ETV3P41162 512 aa11.54□□□□□ -0.56
HMGCS1-204ENST00000507293 GNPDA1P46926 289 aa11.54□□□□□ -0.56
HMGCS1-204ENST00000507293 ZNF165P49910 485 aa11.54□□□□□ -0.56
HMGCS1-204ENST00000507293 MAZP56270 477 aaKnown RBP11.54□□□□□ -0.56
HMGCS1-204ENST00000507293 CDK3Q00526 305 aa11.54□□□□□ -0.56
HMGCS1-204ENST00000507293 ZFP36L1Q07352 338 aaKnown RBP11.54□□□□□ -0.56
HMGCS1-204ENST00000507293 ARHGEF7Q14155 803 aa11.54□□□□□ -0.56
HMGCS1-204ENST00000507293 PTPRRQ15256 657 aa11.54□□□□□ -0.56
HMGCS1-204ENST00000507293 BOLA3Q53S33 107 aa11.54□□□□□ -0.56
HMGCS1-204ENST00000507293 TMPRSS9Q7Z410 1059 aa11.54□□□□□ -0.56
HMGCS1-204ENST00000507293 KIAA1524Q8TCG1 905 aa11.54□□□□□ -0.56
HMGCS1-204ENST00000507293 GPBAR1Q8TDU6 330 aa11.54□□□□□ -0.56
HMGCS1-204ENST00000507293 NSMCE1Q8WV22 266 aa11.54□□□□□ -0.56
HMGCS1-204ENST00000507293 PTCD2Q8WV60 388 aaKnown RBP11.54□□□□□ -0.56
HMGCS1-204ENST00000507293 TEKT4Q8WW24 435 aa11.54□□□□□ -0.56
HMGCS1-204ENST00000507293 DTD2Q96FN9 168 aa11.54□□□□□ -0.56
HMGCS1-204ENST00000507293 BTBD6Q96KE9 485 aa11.54□□□□□ -0.56
HMGCS1-204ENST00000507293 CCNL2Q96S94 520 aaPredicted RBP11.54□□□□□ -0.56
HMGCS1-204ENST00000507293 TEX101Q9BY14 249 aa11.54□□□□□ -0.56
HMGCS1-204ENST00000507293 FRMD8Q9BZ67 464 aaPredicted RBP11.54□□□□□ -0.56
HMGCS1-204ENST00000507293 THAP2Q9H0W7 228 aa11.54□□□□□ -0.56
HMGCS1-204ENST00000507293 PCDH18Q9HCL0 1135 aa11.54□□□□□ -0.56
HMGCS1-204ENST00000507293 SPATS2LQ9NUQ6 558 aaKnown RBP11.54□□□□□ -0.56
HMGCS1-204ENST00000507293 GOLGA6AQ9NYA3 693 aa11.54□□□□□ -0.56
HMGCS1-204ENST00000507293 PHTF1Q9UMS5 762 aa11.54□□□□□ -0.56
HMGCS1-204ENST00000507293 COL6A6A6NMZ7 2263 aa11.53□□□□□ -0.56
HMGCS1-204ENST00000507293 CAPN8A6NHC0 703 aa11.53□□□□□ -0.56
HMGCS1-204ENST00000507293 PSMD11O00231 422 aa11.53□□□□□ -0.56
HMGCS1-204ENST00000507293 NUDT21O43809 227 aaKnown RBP11.53□□□□□ -0.56
HMGCS1-204ENST00000507293 PGLSO95336 258 aa11.53□□□□□ -0.56
HMGCS1-204ENST00000507293 SERPINC1P01008 464 aa11.53□□□□□ -0.56
HMGCS1-204ENST00000507293 FUCA1P04066 466 aa11.53□□□□□ -0.56
HMGCS1-204ENST00000507293 CEACAM5P06731 702 aa11.53□□□□□ -0.56
HMGCS1-204ENST00000507293 CCNB1P14635 433 aa11.53□□□□□ -0.56
HMGCS1-204ENST00000507293 CTPS1P17812 591 aa11.53□□□□□ -0.56
HMGCS1-204ENST00000507293 NFKBIAP25963 317 aa11.53□□□□□ -0.56
HMGCS1-204ENST00000507293 SERPINB6P35237 376 aa11.53□□□□□ -0.56
HMGCS1-204ENST00000507293 ETV5P41161 510 aa11.53□□□□□ -0.56
HMGCS1-204ENST00000507293 MMP13P45452 471 aa11.53□□□□□ -0.56
HMGCS1-204ENST00000507293 SLC25A11Q02978 314 aaKnown RBP11.53□□□□□ -0.56
HMGCS1-204ENST00000507293 ILF3Q12906 894 aaKnown RBP eCLIP11.53□□□□□ -0.56
HMGCS1-204ENST00000507293 SRSF6Q13247 344 aaKnown RBP11.53□□□□□ -0.56
HMGCS1-204ENST00000507293 PIGHQ14442 188 aaPredicted RBP11.53□□□□□ -0.56
HMGCS1-204ENST00000507293 KRT81Q14533 505 aa11.53□□□□□ -0.56
HMGCS1-204ENST00000507293 TGIF1Q15583 401 aa11.53□□□□□ -0.56
HMGCS1-204ENST00000507293 MAP9Q49MG5 647 aa11.53□□□□□ -0.56
HMGCS1-204ENST00000507293 FIGNQ5HY92 759 aa11.53□□□□□ -0.56
HMGCS1-204ENST00000507293 PHF19Q5T6S3 580 aa11.53□□□□□ -0.56
HMGCS1-204ENST00000507293 ARMC12Q5T9G4 340 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms