RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 AADACL2Q6P093 401 aa8.47□□□□□ -1.05
PDGFC-205ENST00000506880 PRR23BQ6ZRT6 265 aa8.47□□□□□ -1.05
PDGFC-205ENST00000506880 TMC3Q7Z5M5 1100 aa8.47□□□□□ -1.05
PDGFC-205ENST00000506880 LMNTD2Q8IXW0 634 aa8.47□□□□□ -1.05
PDGFC-205ENST00000506880 MPP5Q8N3R9 675 aa8.47□□□□□ -1.05
PDGFC-205ENST00000506880 EIF1ADQ8N9N8 165 aaKnown RBP8.47□□□□□ -1.05
PDGFC-205ENST00000506880 SPATA4Q8NEY3 305 aa8.47□□□□□ -1.05
PDGFC-205ENST00000506880 STYXQ8WUJ0 223 aa8.47□□□□□ -1.05
PDGFC-205ENST00000506880 BTN2A2Q8WVV5 523 aa8.47□□□□□ -1.05
PDGFC-205ENST00000506880 C1orf54Q8WWF1 131 aa8.47□□□□□ -1.05
PDGFC-205ENST00000506880 CENPTQ96BT3 561 aa8.47□□□□□ -1.05
PDGFC-205ENST00000506880 VPS35Q96QK1 796 aa8.47□□□□□ -1.05
PDGFC-205ENST00000506880 TTC1Q99614 292 aa8.47□□□□□ -1.05
PDGFC-205ENST00000506880 TBL1YQ9BQ87 522 aa8.47□□□□□ -1.05
PDGFC-205ENST00000506880 ZCCHC2Q9C0B9 1178 aaKnown RBP8.47□□□□□ -1.05
PDGFC-205ENST00000506880 MTG2Q9H4K7 406 aa8.47□□□□□ -1.05
PDGFC-205ENST00000506880 CAPN10Q9HC96 672 aa8.47□□□□□ -1.05
PDGFC-205ENST00000506880 SMOXQ9NWM0 555 aa8.47□□□□□ -1.05
PDGFC-205ENST00000506880 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.47□□□□□ -1.05
PDGFC-205ENST00000506880 NCKIPSDQ9NZQ3 722 aa8.47□□□□□ -1.05
PDGFC-205ENST00000506880 BFARQ9NZS9 450 aa8.47□□□□□ -1.05
PDGFC-205ENST00000506880 NCDNQ9UBB6 729 aa8.47□□□□□ -1.05
PDGFC-205ENST00000506880 B4GALT6Q9UBX8 382 aa8.47□□□□□ -1.05
PDGFC-205ENST00000506880 SERGEFQ9UGK8 458 aa8.47□□□□□ -1.05
PDGFC-205ENST00000506880 SHOC2Q9UQ13 582 aa8.47□□□□□ -1.05
PDGFC-205ENST00000506880 CHKBQ9Y259 395 aa8.47□□□□□ -1.05
PDGFC-205ENST00000506880 NEU2Q9Y3R4 380 aa8.47□□□□□ -1.05
PDGFC-205ENST00000506880 PKP3Q9Y446 797 aa8.47□□□□□ -1.05
PDGFC-205ENST00000506880 ACTL7AQ9Y615 435 aa8.47□□□□□ -1.05
PDGFC-205ENST00000506880 GOLGA4Q13439 2230 aaKnown RBP8.47□□□□□ -1.05
PDGFC-205ENST00000506880 PCDH15Q96QU1 1955 aa8.46□□□□□ -1.05
PDGFC-205ENST00000506880 PIKFYVEQ9Y2I7 2098 aa8.46□□□□□ -1.05
PDGFC-205ENST00000506880 C1orf232A0A0U1RR37 186 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 QSOX1O00391 747 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 PFDN6O15212 129 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 EIF3HO15372 352 aaKnown RBP eCLIP8.46□□□□□ -1.06
PDGFC-205ENST00000506880 SPINT1O43278 529 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 LZTS3O60299 673 aaPredicted RBP8.46□□□□□ -1.06
PDGFC-205ENST00000506880 MAP3K6O95382 1288 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 TTC4O95801 387 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 IFNB1P01574 187 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 KRT14P02533 472 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 ATXN1LP0C7T5 689 aaKnown RBP8.46□□□□□ -1.06
PDGFC-205ENST00000506880 CDK4P11802 303 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 C6P13671 934 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 ITIH2P19823 946 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 BCKDHBP21953 392 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 LPOP22079 712 aaPredicted RBP8.46□□□□□ -1.06
PDGFC-205ENST00000506880 ADRA1DP25100 572 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 HNF1BP35680 557 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 SPINT3P49223 89 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 ARRB1P49407 418 aaPredicted RBP8.46□□□□□ -1.06
PDGFC-205ENST00000506880 LIG3P49916 1009 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 C21orf59P57076 290 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 PFN3P60673 137 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 FAM193AP78312 1265 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 DR1Q01658 176 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 RALGDSQ12967 914 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 SUZ12Q15022 739 aaKnown RBP8.46□□□□□ -1.06
PDGFC-205ENST00000506880 PPP1R7Q15435 360 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 CNGA3Q16281 694 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 CDKN3Q16667 212 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 SKIDA1Q1XH10 827 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 GPR33Q49SQ1 333 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 LCE2DQ5TA82 110 aaPredicted RBP8.46□□□□□ -1.06
PDGFC-205ENST00000506880 LYPLAL1Q5VWZ2 237 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 LRRC8BQ6P9F7 803 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 ZNF449Q6P9G9 518 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 ADAMTSL4Q6UY14 1074 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 LEKR1Q6ZMV7 388 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 TECPR1Q7Z6L1 1165 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 SLC41A1Q8IVJ1 513 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 PPIL6Q8IXY8 311 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 RGL4Q8IZJ4 473 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 AVL9Q8NBF6 648 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 LPCAT1Q8NF37 534 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 OR6K2Q8NGY2 324 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 CCDC110Q8TBZ0 833 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 PDCD6IPQ8WUM4 868 aaKnown RBP8.46□□□□□ -1.06
PDGFC-205ENST00000506880 RLN3Q8WXF3 142 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 ATG4AQ8WYN0 398 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.46□□□□□ -1.064e-7■■■■■ 58.1
PDGFC-205ENST00000506880 ULK4Q96C45 1275 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 NUS1Q96E22 293 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 MS4A3Q96HJ5 214 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 OXNAD1Q96HP4 312 aaPredicted RBP8.46□□□□□ -1.06
PDGFC-205ENST00000506880 SERAC1Q96JX3 654 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 ZNF514Q96K75 400 aaPredicted RBP8.46□□□□□ -1.06
PDGFC-205ENST00000506880 C16orf45Q96MC5 204 aaPredicted RBP8.46□□□□□ -1.06
PDGFC-205ENST00000506880 KLF6Q99612 283 aaPredicted RBP8.46□□□□□ -1.06
PDGFC-205ENST00000506880 ORAI3Q9BRQ5 295 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 C6orf106Q9H6K1 298 aaPredicted RBP8.46□□□□□ -1.06
PDGFC-205ENST00000506880 CASS4Q9NQ75 786 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 GDF3Q9NR23 364 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 RAB6BQ9NRW1 208 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 PHPT1Q9NRX4 125 aaPredicted RBP8.46□□□□□ -1.06
PDGFC-205ENST00000506880 EVA1BQ9NVM1 165 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 WHRNQ9P202 907 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 VPS18Q9P253 973 aa8.46□□□□□ -1.06
PDGFC-205ENST00000506880 ZFR2Q9UPR6 939 aaKnown RBP8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms