RNA–Protein interactions for RNA: ENST00000504181.1

LSM6-204, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM6, Length 549 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM6-204	ENST00000504181	WDR74	Q6RFH5	385 aa	Predicted RBP	12.52	□□□□□ -0.41
LSM6-204	ENST00000504181	ZNF783	Q6ZMS7	281 aa		12.52	□□□□□ -0.41
LSM6-204	ENST00000504181	CDH24	Q86UP0	819 aa		12.52	□□□□□ -0.41
LSM6-204	ENST00000504181	HPS6	Q86YV9	775 aa		12.52	□□□□□ -0.41
LSM6-204	ENST00000504181	DRC7	Q8IY82	874 aa		12.52	□□□□□ -0.41
LSM6-204	ENST00000504181	ARHGEF2	Q92974	986 aa	Known RBP	12.52	□□□□□ -0.41
LSM6-204	ENST00000504181	HMCES	Q96FZ2	354 aa		12.52	□□□□□ -0.41
LSM6-204	ENST00000504181	SLC2A13	Q96QE2	648 aa		12.52	□□□□□ -0.41
LSM6-204	ENST00000504181	MED15	Q96RN5	788 aa		12.52	□□□□□ -0.41
LSM6-204	ENST00000504181	SLC38A3	Q99624	504 aa		12.52	□□□□□ -0.41
LSM6-204	ENST00000504181	TRIM8	Q9BZR9	551 aa		12.52	□□□□□ -0.41
LSM6-204	ENST00000504181	NTNG1	Q9Y2I2	539 aa		12.52	□□□□□ -0.41
LSM6-204	ENST00000504181	COPG1	Q9Y678	874 aa	Known RBP	12.52	□□□□□ -0.41
LSM6-204	ENST00000504181	RTTN	Q86VV8	2226 aa		12.52	□□□□□ -0.41
LSM6-204	ENST00000504181	NUP210L	Q5VU65	1888 aa		12.51	□□□□□ -0.41
LSM6-204	ENST00000504181		F5H423	210 aa	Predicted RBP	12.51	□□□□□ -0.41
LSM6-204	ENST00000504181		I6L893	689 aa	Predicted RBP	12.51	□□□□□ -0.41
LSM6-204	ENST00000504181	FUCA1	P04066	466 aa		12.51	□□□□□ -0.41
LSM6-204	ENST00000504181	DRD2	P14416	443 aa		12.51	□□□□□ -0.41
LSM6-204	ENST00000504181	TBXAS1	P24557	533 aa	Predicted RBP	12.51	□□□□□ -0.41
LSM6-204	ENST00000504181	MAPK9	P45984	424 aa		12.51	□□□□□ -0.41
LSM6-204	ENST00000504181	KRTAP10-9	P60411	292 aa		12.51	□□□□□ -0.41
LSM6-204	ENST00000504181	LRRC31	Q6UY01	552 aa		12.51	□□□□□ -0.41
LSM6-204	ENST00000504181	FJX1	Q86VR8	437 aa		12.51	□□□□□ -0.41
LSM6-204	ENST00000504181	PELI3	Q8N2H9	469 aa		12.51	□□□□□ -0.41
LSM6-204	ENST00000504181	GUF1	Q8N442	669 aa	Known RBP	12.51	□□□□□ -0.41
LSM6-204	ENST00000504181	NETO2	Q8NC67	525 aa		12.51	□□□□□ -0.41
LSM6-204	ENST00000504181	ST6GALNAC3	Q8NDV1	305 aa		12.51	□□□□□ -0.41
LSM6-204	ENST00000504181	UBE2Q2	Q8WVN8	375 aa		12.51	□□□□□ -0.41
LSM6-204	ENST00000504181	REPIN1	Q9BWE0	567 aa	Known RBP	12.51	□□□□□ -0.41
LSM6-204	ENST00000504181	TKTL2	Q9H0I9	626 aa		12.51	□□□□□ -0.41
LSM6-204	ENST00000504181	WDR26	Q9H7D7	661 aa		12.51	□□□□□ -0.41
LSM6-204	ENST00000504181	PCDH12	Q9NPG4	1184 aa		12.51	□□□□□ -0.41
LSM6-204	ENST00000504181	LHX9	Q9NQ69	397 aa		12.51	□□□□□ -0.41
LSM6-204	ENST00000504181	PADI1	Q9ULC6	663 aa		12.51	□□□□□ -0.41
LSM6-204	ENST00000504181	G3BP2	Q9UN86	482 aa	Known RBP	12.51	□□□□□ -0.41
LSM6-204	ENST00000504181	MORC2	Q9Y6X9	1032 aa	Predicted RBP	12.51	□□□□□ -0.41
LSM6-204	ENST00000504181	C21orf140	B9A014	251 aa		12.5	□□□□□ -0.41
LSM6-204	ENST00000504181	ZNF185	O15231	689 aa		12.5	□□□□□ -0.41
LSM6-204	ENST00000504181	PRICKLE3	O43900	615 aa	Predicted RBP	12.5	□□□□□ -0.41
LSM6-204	ENST00000504181	STX10	O60499	249 aa		12.5	□□□□□ -0.41
LSM6-204	ENST00000504181	SRGAP2	O75044	1071 aa		12.5	□□□□□ -0.41
LSM6-204	ENST00000504181	RHOBTB3	O94955	611 aa		12.5	□□□□□ -0.41
LSM6-204	ENST00000504181	PIGN	O95427	931 aa		12.5	□□□□□ -0.41
LSM6-204	ENST00000504181	HOXC4	P09017	264 aa	Predicted RBP	12.5	□□□□□ -0.41
LSM6-204	ENST00000504181	BPI	P17213	487 aa		12.5	□□□□□ -0.41
LSM6-204	ENST00000504181	CTBS	Q01459	385 aa		12.5	□□□□□ -0.41
LSM6-204	ENST00000504181	RAD51	Q06609	339 aa		12.5	□□□□□ -0.41
LSM6-204	ENST00000504181	ADAM9	Q13443	819 aa		12.5	□□□□□ -0.41
LSM6-204	ENST00000504181	RAPSN	Q13702	412 aa		12.5	□□□□□ -0.41
LSM6-204	ENST00000504181	STK38	Q15208	465 aa		12.5	□□□□□ -0.41
LSM6-204	ENST00000504181	NFIL3	Q16649	462 aa		12.5	□□□□□ -0.41
LSM6-204	ENST00000504181	MIIP	Q5JXC2	388 aa		12.5	□□□□□ -0.41
LSM6-204	ENST00000504181	TCERG1L	Q5VWI1	586 aa		12.5	□□□□□ -0.41
LSM6-204	ENST00000504181	NXPE1	Q8N323	547 aa		12.5	□□□□□ -0.41
LSM6-204	ENST00000504181	PTCD2	Q8WV60	388 aa	Known RBP	12.5	□□□□□ -0.41
LSM6-204	ENST00000504181	SEC14L1	Q92503	715 aa		12.5	□□□□□ -0.41
LSM6-204	ENST00000504181	KAT5	Q92993	513 aa		12.5	□□□□□ -0.41
LSM6-204	ENST00000504181	GDAP1L1	Q96MZ0	367 aa		12.5	□□□□□ -0.41
LSM6-204	ENST00000504181	OR6C1	Q96RD1	312 aa		12.5	□□□□□ -0.41
LSM6-204	ENST00000504181	WDCP	Q9H6R7	721 aa		12.5	□□□□□ -0.41
LSM6-204	ENST00000504181	PIGV	Q9NUD9	493 aa		12.5	□□□□□ -0.41
LSM6-204	ENST00000504181	TRNAU1AP	Q9NX07	287 aa	Known RBP	12.5	□□□□□ -0.41
LSM6-204	ENST00000504181	FAM13B	Q9NYF5	915 aa		12.5	□□□□□ -0.41
LSM6-204	ENST00000504181	ZNF212	Q9UDV6	495 aa		12.5	□□□□□ -0.41
LSM6-204	ENST00000504181	SUFU	Q9UMX1	484 aa		12.5	□□□□□ -0.41
LSM6-204	ENST00000504181	PLEKHM1	Q9Y4G2	1056 aa		12.5	□□□□□ -0.41
LSM6-204	ENST00000504181	ACAN	P16112	2415 aa		12.5	□□□□□ -0.41
LSM6-204	ENST00000504181	DOCK10	Q96BY6	2186 aa		12.49	□□□□□ -0.41
LSM6-204	ENST00000504181	IGLV3-10	A0A075B6K4	115 aa		12.49	□□□□□ -0.41
LSM6-204	ENST00000504181	RECQL5	O94762	991 aa	Predicted RBP	12.49	□□□□□ -0.41
LSM6-204	ENST00000504181	TRIM23	P36406	574 aa		12.49	□□□□□ -0.41
LSM6-204	ENST00000504181	MMP12	P39900	470 aa		12.49	□□□□□ -0.41
LSM6-204	ENST00000504181	ACTR1B	P42025	376 aa		12.49	□□□□□ -0.41
LSM6-204	ENST00000504181	ACTR1A	P61163	376 aa		12.49	□□□□□ -0.41
LSM6-204	ENST00000504181	SH3BP2	P78314	561 aa		12.49	□□□□□ -0.41
LSM6-204	ENST00000504181	ART3	Q13508	389 aa		12.49	□□□□□ -0.41
LSM6-204	ENST00000504181	DCAF17	Q5H9S7	520 aa	Predicted RBP	12.49	□□□□□ -0.41
LSM6-204	ENST00000504181	OTUD1	Q5VV17	481 aa	Predicted RBP	12.49	□□□□□ -0.41
LSM6-204	ENST00000504181	FAM199X	Q6PEV8	388 aa	Predicted RBP	12.49	□□□□□ -0.41
LSM6-204	ENST00000504181	SHC4	Q6S5L8	630 aa		12.49	□□□□□ -0.41
LSM6-204	ENST00000504181	GLIS1	Q8NBF1	620 aa		12.49	□□□□□ -0.41
LSM6-204	ENST00000504181	SLC37A2	Q8TED4	501 aa		12.49	□□□□□ -0.41
LSM6-204	ENST00000504181	ILKAP	Q9H0C8	392 aa	Predicted RBP	12.49	□□□□□ -0.41
LSM6-204	ENST00000504181	BRD8	Q9H0E9	1235 aa		12.49	□□□□□ -0.41
LSM6-204	ENST00000504181	ARHGEF38	Q9NXL2	777 aa		12.49	□□□□□ -0.41
LSM6-204	ENST00000504181	GPR83	Q9NYM4	423 aa		12.49	□□□□□ -0.41
LSM6-204	ENST00000504181	SERTAD1	Q9UHV2	236 aa		12.49	□□□□□ -0.41
LSM6-204	ENST00000504181	B3GNT3	Q9Y2A9	372 aa		12.49	□□□□□ -0.41
LSM6-204	ENST00000504181	COQ4	Q9Y3A0	265 aa		12.49	□□□□□ -0.41
LSM6-204	ENST00000504181	PDE2A	O00408	941 aa	Predicted RBP	12.48	□□□□□ -0.41
LSM6-204	ENST00000504181	INSIG1	O15503	277 aa		12.48	□□□□□ -0.41
LSM6-204	ENST00000504181	BUB1B	O60566	1050 aa	Predicted RBP	12.48	□□□□□ -0.41
LSM6-204	ENST00000504181	SPAG6	O75602	509 aa		12.48	□□□□□ -0.41
LSM6-204	ENST00000504181	IGSF6	O95976	241 aa		12.48	□□□□□ -0.41
LSM6-204	ENST00000504181	CEACAM5	P06731	702 aa		12.48	□□□□□ -0.41
LSM6-204	ENST00000504181	MYCLP1	P12525	358 aa	Predicted RBP	12.48	□□□□□ -0.41
LSM6-204	ENST00000504181	CD1E	P15812	388 aa		12.48	□□□□□ -0.41
LSM6-204	ENST00000504181	RPL13	P26373	211 aa	Known RBP	12.48	□□□□□ -0.41
LSM6-204	ENST00000504181	PTPN4	P29074	926 aa		12.48	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms