RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 KLHL5Q96PQ7 755 aa16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 VCX3AQ9NNX9 186 aa16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 NT5MQ9NPB1 228 aa16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 APPL1Q9UKG1 709 aa16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 DSEQ9UL01 958 aa16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 TRAF6Q9Y4K3 522 aa16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 AK5Q9Y6K8 562 aa16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 SCN5AQ14524 2016 aa16.12■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 A0A1B0GVG6 124 aa16.12■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 TTC24A2A3L6 582 aaPredicted RBP16.12■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 MROH6A6NGR9 719 aa16.12■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 CCL22O00626 93 aa16.12■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 PAPSS2O95340 614 aaPredicted RBP16.12■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 S1PR4O95977 384 aa16.12■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 CLPTM1O96005 669 aa16.12■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 SPATA31D3P0C874 917 aa16.12■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 IMPDH1P20839 514 aa16.12■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 GRIK1P39086 918 aa16.12■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 THPOP40225 353 aa16.12■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 DSC2Q02487 901 aa16.12■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 RALGDSQ12967 914 aa16.12■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 MAPRE2Q15555 327 aa16.12■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 TRIM60Q495X7 471 aa16.12■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 PABPC1LQ4VXU2 614 aaKnown RBP16.12■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 SPATA31D4Q6ZUB0 917 aa16.12■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 LARP4Q71RC2 724 aaKnown RBP eCLIP16.12■□□□□ 0.177e-7■■■□□ 15.4
MSH5-SAPCD1-208ENST00000498473 UMODL1-AS1Q8N2C9 162 aa16.12■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 LPGAT1Q92604 370 aa16.12■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 TOP1MTQ969P6 601 aa16.12■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 DGCR14Q96DF8 476 aaKnown RBP16.12■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 TSPAN17Q96FV3 270 aa16.12■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 HMCESQ96FZ2 354 aa16.12■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 C1orf74Q96LT6 269 aa16.12■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 CRISPLD2Q9H0B8 497 aa16.12■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 RMI1Q9H9A7 625 aa16.12■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 PLK2Q9NYY3 685 aa16.12■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 MARCH4Q9P2E8 410 aaPredicted RBP16.12■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 ATP11BQ9Y2G3 1177 aa16.12■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 CHD7Q9P2D1 2997 aa16.12■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 C7orf72A4D263 438 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 MOXD2PA6NHM9 499 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 SNRPB2P08579 225 aaKnown RBP16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 HAPLN1P10915 354 aaPredicted RBP16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 YWHAQP27348 245 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 HSPA13P48723 471 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 RHDQ02161 417 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 APOFQ13790 326 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 MAPRE1Q15691 268 aaKnown RBP16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 NADK2Q4G0N4 442 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 CLEC6AQ6EIG7 209 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 KLC3Q6P597 504 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 ISCA2Q86U28 154 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 SPATA2LQ8IUW3 424 aaPredicted RBP16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 SLC22A9Q8IVM8 553 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 AFAP1L2Q8N4X5 818 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 SLC39A13Q96H72 371 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 MRPS26Q9BYN8 205 aaKnown RBP16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 PRDM5Q9NQX1 630 aaPredicted RBP16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 EPS15L1Q9UBC2 864 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 AP4S1Q9Y587 144 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 GMEB1Q9Y692 573 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 TCRBV3S1A0A5B6 114 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 GPR182O15218 404 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 SLC7A4O43246 635 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 TNFAIP8O95379 198 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 OR4Q2P0C623 313 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 TSPAN8P19075 237 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 CD52P31358 61 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 TSPY1Q01534 308 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 TRAP1Q12931 704 aaKnown RBP16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 UGT3A2Q3SY77 523 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 UNC50Q53HI1 259 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 C6orf10Q5SRN2 563 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 ZNF678Q5SXM1 525 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 GPR158Q5T848 1215 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 IYDQ6PHW0 289 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 RBM44Q6ZP01 1051 aaKnown RBP16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 TFAP2DQ7Z6R9 452 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 SERINC5Q86VE9 423 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 THEM5Q8N1Q8 247 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 OR9I1Q8NGQ6 314 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 FATE1Q969F0 183 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 HDAC10Q969S8 669 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 NMD3Q96D46 503 aaKnown RBP16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 L3HYPDHQ96EM0 354 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 DUS3LQ96G46 650 aaKnown RBP16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 C3orf30Q96M34 536 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 ZCWPW1Q9H0M4 648 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 RBM38Q9H0Z9 239 aaKnown RBP16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 MFSD1Q9H3U5 465 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 ALG9Q9H6U8 611 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 FBRSL1Q9HCM7 1045 aaKnown RBP16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 MRPL40Q9NQ50 206 aaKnown RBP16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 MRGBPQ9NV56 204 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 FNIP2Q9P278 1114 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 TMEM181Q9P2C4 612 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 PADI3Q9ULW8 664 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 KCTD3Q9Y597 815 aa16.11■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 OR51F1A6NGY5 319 aa16.1■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 GPC4O75487 556 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms