RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 LATO43561 262 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 AVILO75366 819 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 RECQL5O94762 991 aaPredicted RBP11.9□□□□□ -0.5
CUX1-210ENST00000497815 SEC31AO94979 1220 aaKnown RBP11.9□□□□□ -0.5
CUX1-210ENST00000497815 ZNF30P17039 623 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 ITPKAP23677 461 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 STC1P52823 247 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 ITGA8P53708 1063 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 CRADDP78560 199 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 SARNPP82979 210 aaKnown RBP11.9□□□□□ -0.5
CUX1-210ENST00000497815 CDK16Q00536 496 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 GUCY2DQ02846 1103 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 PTSQ03393 145 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 PTPRCAPQ14761 206 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 CDKN3Q16667 212 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 CCDC38Q502W7 563 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 WDR45BQ5MNZ6 344 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 DUPD1Q68J44 220 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 Q6ZVL8 140 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 ZNF534Q76KX8 674 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 PCGF5Q86SE9 256 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 EID2BQ96D98 161 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 NUS1Q96E22 293 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 SERAC1Q96JX3 654 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 ZC3H10Q96K80 434 aaKnown RBP11.9□□□□□ -0.5
CUX1-210ENST00000497815 COQ10AQ96MF6 247 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 LYSMD1Q96S90 227 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 C1QTNF2Q9BXJ5 285 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 RAB17Q9H0T7 212 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 IRF2BPLQ9H1B7 796 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 EPC1Q9H2F5 836 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 HACD3Q9P035 362 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 RAPGEFL1Q9UHV5 662 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 RAB23Q9ULC3 237 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 SMG5Q9UPR3 1016 aaKnown RBP11.9□□□□□ -0.5
CUX1-210ENST00000497815 CA5BQ9Y2D0 317 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 FNDC3AQ9Y2H6 1198 aaKnown RBP11.9□□□□□ -0.5
CUX1-210ENST00000497815 KCTD3Q9Y597 815 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 ARL5AQ9Y689 179 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 SLCO1B1Q9Y6L6 691 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 ZNF318Q5VUA4 2279 aa11.9□□□□□ -0.5
CUX1-210ENST00000497815 CUL9Q8IWT3 2517 aa11.89□□□□□ -0.51
CUX1-210ENST00000497815 A0A1W2PPC4 97 aa11.89□□□□□ -0.51
CUX1-210ENST00000497815 CRTAMO95727 393 aa11.89□□□□□ -0.51
CUX1-210ENST00000497815 PCCBP05166 539 aa11.89□□□□□ -0.51
CUX1-210ENST00000497815 RHOXF2BP0C7M4 288 aa11.89□□□□□ -0.51
CUX1-210ENST00000497815 GM2AP17900 193 aa11.89□□□□□ -0.51
CUX1-210ENST00000497815 MGAT1P26572 445 aa11.89□□□□□ -0.51
CUX1-210ENST00000497815 CD27P26842 260 aa11.89□□□□□ -0.51
CUX1-210ENST00000497815 AKT2P31751 481 aa11.89□□□□□ -0.51
CUX1-210ENST00000497815 CLDN2P57739 230 aa11.89□□□□□ -0.51
CUX1-210ENST00000497815 TMPRSS15P98073 1019 aa11.89□□□□□ -0.51
CUX1-210ENST00000497815 CREB5Q02930 508 aa11.89□□□□□ -0.51
CUX1-210ENST00000497815 CALCOCO2Q13137 446 aa11.89□□□□□ -0.51
CUX1-210ENST00000497815 MSLNQ13421 630 aaPredicted RBP11.89□□□□□ -0.51
CUX1-210ENST00000497815 TRADDQ15628 312 aa11.89□□□□□ -0.51
CUX1-210ENST00000497815 SPDYCQ5MJ68 293 aa11.89□□□□□ -0.51
CUX1-210ENST00000497815 TEX35Q5T0J7 233 aa11.89□□□□□ -0.51
CUX1-210ENST00000497815 ALS2CLQ60I27 953 aa11.89□□□□□ -0.51
CUX1-210ENST00000497815 HIBCHQ6NVY1 386 aaPredicted RBP11.89□□□□□ -0.51
CUX1-210ENST00000497815 LRRC8BQ6P9F7 803 aa11.89□□□□□ -0.51
CUX1-210ENST00000497815 KDM7AQ6ZMT4 941 aa11.89□□□□□ -0.51
CUX1-210ENST00000497815 CYP2U1Q7Z449 544 aa11.89□□□□□ -0.51
CUX1-210ENST00000497815 TMC3Q7Z5M5 1100 aa11.89□□□□□ -0.51
CUX1-210ENST00000497815 TTC30BQ8N4P2 665 aa11.89□□□□□ -0.51
CUX1-210ENST00000497815 ZCCHC9Q8N567 271 aaKnown RBP11.89□□□□□ -0.51
CUX1-210ENST00000497815 MCUQ8NE86 351 aa11.89□□□□□ -0.51
CUX1-210ENST00000497815 BRSK1Q8TDC3 778 aa11.89□□□□□ -0.51
CUX1-210ENST00000497815 PIGKQ92643 395 aa11.89□□□□□ -0.51
CUX1-210ENST00000497815 DTD2Q96FN9 168 aa11.89□□□□□ -0.51
CUX1-210ENST00000497815 PWWP2AQ96N64 755 aa11.89□□□□□ -0.51
CUX1-210ENST00000497815 SLC6A18Q96N87 628 aa11.89□□□□□ -0.51
CUX1-210ENST00000497815 SRPK1Q96SB4 655 aaKnown RBP11.89□□□□□ -0.51
CUX1-210ENST00000497815 RHOXF2Q9BQY4 288 aa11.89□□□□□ -0.51
CUX1-210ENST00000497815 C1QTNF7Q9BXJ2 289 aa11.89□□□□□ -0.51
CUX1-210ENST00000497815 KCNH6Q9H252 994 aa11.89□□□□□ -0.51
CUX1-210ENST00000497815 TRABDQ9H4I3 376 aa11.89□□□□□ -0.51
CUX1-210ENST00000497815 MBNL1Q9NR56 388 aaKnown RBP11.89□□□□□ -0.51
CUX1-210ENST00000497815 AASDHPPTQ9NRN7 309 aa11.89□□□□□ -0.51
CUX1-210ENST00000497815 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.89□□□□□ -0.511e-6■■■■□ 23.3
CUX1-210ENST00000497815 PKD2L2Q9NZM6 624 aa11.89□□□□□ -0.51
CUX1-210ENST00000497815 PLXND1Q9Y4D7 1925 aa11.88□□□□□ -0.51
CUX1-210ENST00000497815 C2orf81A6NN90 581 aa11.88□□□□□ -0.51
CUX1-210ENST00000497815 C10orf142B7Z368 130 aa11.88□□□□□ -0.51
CUX1-210ENST00000497815 AP3B1O00203 1094 aa11.88□□□□□ -0.51
CUX1-210ENST00000497815 PSMD11O00231 422 aa11.88□□□□□ -0.51
CUX1-210ENST00000497815 CCL22O00626 93 aa11.88□□□□□ -0.51
CUX1-210ENST00000497815 STX7O15400 261 aaKnown RBP11.88□□□□□ -0.51
CUX1-210ENST00000497815 LPOP22079 712 aaPredicted RBP11.88□□□□□ -0.51
CUX1-210ENST00000497815 HNRNPA2B1P22626 353 aaKnown RBP11.88□□□□□ -0.51
CUX1-210ENST00000497815 SPINT3P49223 89 aa11.88□□□□□ -0.51
CUX1-210ENST00000497815 MORF4L2Q15014 288 aa11.88□□□□□ -0.51
CUX1-210ENST00000497815 LRRC14Q15048 493 aa11.88□□□□□ -0.51
CUX1-210ENST00000497815 IRF4Q15306 451 aa11.88□□□□□ -0.51
CUX1-210ENST00000497815 TAF1AQ15573 450 aaPredicted RBP11.88□□□□□ -0.51
CUX1-210ENST00000497815 TECPR1Q7Z6L1 1165 aa11.88□□□□□ -0.51
CUX1-210ENST00000497815 CAND1Q86VP6 1230 aaKnown RBP11.88□□□□□ -0.51
CUX1-210ENST00000497815 HOOK3Q86VS8 718 aa11.88□□□□□ -0.51
CUX1-210ENST00000497815 CBARPQ8N350 705 aaPredicted RBP11.88□□□□□ -0.51
CUX1-210ENST00000497815 MPP5Q8N3R9 675 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms