RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 STN1Q9H668 368 aaKnown RBP8.38□□□□□ -1.07
USP54-215ENST00000497106 CCDC134Q9H6E4 229 aa8.38□□□□□ -1.07
USP54-215ENST00000497106 FBXO6Q9NRD1 293 aaPredicted RBP8.38□□□□□ -1.07
USP54-215ENST00000497106 VTI1BQ9UEU0 232 aa8.38□□□□□ -1.07
USP54-215ENST00000497106 PLLPQ9Y342 182 aa8.38□□□□□ -1.07
USP54-215ENST00000497106 SUPT3HB4E1H0 165 aa8.38□□□□□ -1.07
USP54-215ENST00000497106 HOXC11O43248 304 aaPredicted RBP8.38□□□□□ -1.07
USP54-215ENST00000497106 SUPT3HO75486 399 aa8.38□□□□□ -1.07
USP54-215ENST00000497106 GOT2P00505 430 aaKnown RBP8.38□□□□□ -1.07
USP54-215ENST00000497106 IRS1P35568 1242 aa8.38□□□□□ -1.07
USP54-215ENST00000497106 IL2P60568 153 aa8.38□□□□□ -1.07
USP54-215ENST00000497106 GRSF1Q12849 480 aaKnown RBP eCLIP8.38□□□□□ -1.07
USP54-215ENST00000497106 SETMARQ53H47 684 aaPredicted RBP8.38□□□□□ -1.07
USP54-215ENST00000497106 ALG1LQ6GMV1 187 aa8.38□□□□□ -1.07
USP54-215ENST00000497106 PRPF39Q86UA1 669 aaKnown RBP8.38□□□□□ -1.07
USP54-215ENST00000497106 LRRC34Q8IZ02 419 aa8.38□□□□□ -1.07
USP54-215ENST00000497106 C2CD4AQ8NCU7 369 aaPredicted RBP8.38□□□□□ -1.07
USP54-215ENST00000497106 NXPE3Q969Y0 559 aa8.38□□□□□ -1.07
USP54-215ENST00000497106 MAGEB10Q96LZ2 347 aaPredicted RBP8.38□□□□□ -1.07
USP54-215ENST00000497106 ILKAPQ9H0C8 392 aaPredicted RBP8.38□□□□□ -1.07
USP54-215ENST00000497106 SMG9Q9H0W8 520 aaKnown RBP8.38□□□□□ -1.07
USP54-215ENST00000497106 TNKS2Q9H2K2 1166 aa8.38□□□□□ -1.07
USP54-215ENST00000497106 RABEP2Q9H5N1 569 aa8.38□□□□□ -1.07
USP54-215ENST00000497106 CD207Q9UJ71 328 aa8.38□□□□□ -1.07
USP54-215ENST00000497106 STARD13Q9Y3M8 1113 aa8.38□□□□□ -1.07
USP54-215ENST00000497106 UPK3BL1B0FP48 263 aa8.38□□□□□ -1.07
USP54-215ENST00000497106 UPK3BL2E5RIL1 263 aa8.38□□□□□ -1.07
USP54-215ENST00000497106 HGSO14964 777 aaPredicted RBP8.38□□□□□ -1.07
USP54-215ENST00000497106 CIB2O75838 187 aa8.38□□□□□ -1.07
USP54-215ENST00000497106 ELFN1P0C7U0 828 aa8.38□□□□□ -1.07
USP54-215ENST00000497106 PKMP14618 531 aaKnown RBP8.38□□□□□ -1.07
USP54-215ENST00000497106 RPA3P35244 121 aaPredicted RBP8.38□□□□□ -1.07
USP54-215ENST00000497106 EIF2DP41214 584 aaKnown RBP8.38□□□□□ -1.07
USP54-215ENST00000497106 CCNHP51946 323 aaPredicted RBP8.38□□□□□ -1.07
USP54-215ENST00000497106 RUNX3Q13761 415 aa8.38□□□□□ -1.07
USP54-215ENST00000497106 ATXN7L2Q5T6C5 722 aaPredicted RBP8.38□□□□□ -1.07
USP54-215ENST00000497106 TXNDC11Q6PKC3 985 aa8.38□□□□□ -1.07
USP54-215ENST00000497106 TTC7BQ86TV6 843 aa8.38□□□□□ -1.07
USP54-215ENST00000497106 ZNF683Q8IZ20 524 aa8.38□□□□□ -1.07
USP54-215ENST00000497106 STAG3L4Q8TBR4 150 aa8.38□□□□□ -1.07
USP54-215ENST00000497106 TCEAL4Q96EI5 215 aa8.38□□□□□ -1.07
USP54-215ENST00000497106 SEC16BQ96JE7 1060 aa8.38□□□□□ -1.07
USP54-215ENST00000497106 DNAJC1Q96KC8 554 aaKnown RBP8.38□□□□□ -1.07
USP54-215ENST00000497106 COPS8Q99627 209 aa8.38□□□□□ -1.07
USP54-215ENST00000497106 GPR22Q99680 433 aa8.38□□□□□ -1.07
USP54-215ENST00000497106 FGFR1OP2Q9NVK5 253 aa8.38□□□□□ -1.07
USP54-215ENST00000497106 ELOVL2Q9NXB9 296 aa8.38□□□□□ -1.07
USP54-215ENST00000497106 GTSE1Q9NYZ3 720 aa8.38□□□□□ -1.07
USP54-215ENST00000497106 CD274Q9NZQ7 290 aa8.38□□□□□ -1.07
USP54-215ENST00000497106 TRIP11Q15643 1979 aa8.38□□□□□ -1.07
USP54-215ENST00000497106 RAD51BO15315 384 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 PENKP01210 267 aaPredicted RBP8.37□□□□□ -1.07
USP54-215ENST00000497106 ATP5F1P24539 256 aaPredicted RBP8.37□□□□□ -1.07
USP54-215ENST00000497106 PRKAA1Q13131 559 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 CSHL1Q14406 222 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 RPS6KA2Q15349 733 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 MAPRE2Q15555 327 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 SMAD1Q15797 465 aaKnown RBP8.37□□□□□ -1.07
USP54-215ENST00000497106 HECTD2Q5U5R9 776 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 NXNQ6DKJ4 435 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 EXT2Q93063 718 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 LRRC37BQ96QE4 947 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 DHRS4Q9BTZ2 278 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 POLR3BQ9NW08 1133 aaPredicted RBP8.37□□□□□ -1.07
USP54-215ENST00000497106 HS3ST2Q9Y278 367 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 TNPO3Q9Y5L0 923 aaKnown RBP8.37□□□□□ -1.07
USP54-215ENST00000497106 CTPS1P17812 591 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 CCNFP41002 786 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 PGFP49763 221 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 IFT88Q13099 833 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 MAP7Q14244 749 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 QPCTQ16769 361 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 TRMT10BQ6PF06 316 aaKnown RBP8.37□□□□□ -1.07
USP54-215ENST00000497106 ADAMTSL2Q86TH1 951 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 SLC41A1Q8IVJ1 513 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 TP53INP2Q8IXH6 220 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 C12orf76Q8N812 135 aaPredicted RBP8.37□□□□□ -1.07
USP54-215ENST00000497106 ARRDC2Q8TBH0 407 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 TBATAQ96M53 351 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 LATS2Q9NRM7 1088 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 MICAL3Q7RTP6 2002 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 ASMTLO95671 621 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 ADH1BP00325 375 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 ENO3P13929 434 aaPredicted RBP8.37□□□□□ -1.07
USP54-215ENST00000497106 CYP2A7P20853 494 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 NTHL1P78549 312 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 PLOD1Q02809 727 aaPredicted RBP8.37□□□□□ -1.07
USP54-215ENST00000497106 SGCGQ13326 291 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 TCEAL5Q5H9L2 206 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 CXorf57Q6NSI4 855 aaKnown RBP8.37□□□□□ -1.07
USP54-215ENST00000497106 IGDCC3Q8IVU1 814 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 CHPFQ8IZ52 775 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 DDX51Q8N8A6 666 aaKnown RBP eCLIP8.37□□□□□ -1.07
USP54-215ENST00000497106 ZNF75CPQ92670 426 aaPredicted RBP8.37□□□□□ -1.07
USP54-215ENST00000497106 FGF13Q92913 245 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 CDKN2AIPNLQ96HQ2 116 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 KLHL32Q96NJ5 620 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 TRMOQ9BU70 441 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 NOL6Q9H6R4 1146 aaKnown RBP8.37□□□□□ -1.07
USP54-215ENST00000497106 ECT2Q9H8V3 914 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms