RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 RECQL5O94762 991 aaPredicted RBP13.17□□□□□ -0.3
PTPRF-215ENST00000496447 TACR2P21452 398 aa13.17□□□□□ -0.3
PTPRF-215ENST00000496447 TUBA4AP68366 448 aa13.17□□□□□ -0.3
PTPRF-215ENST00000496447 SH3BP5LQ7L8J4 393 aa13.17□□□□□ -0.3
PTPRF-215ENST00000496447 ZDHHC13Q8IUH4 622 aa13.17□□□□□ -0.3
PTPRF-215ENST00000496447 OR14C36Q8NHC7 312 aa13.17□□□□□ -0.3
PTPRF-215ENST00000496447 FBXO30Q8TB52 745 aa13.17□□□□□ -0.3
PTPRF-215ENST00000496447 NELL1Q92832 810 aa13.17□□□□□ -0.3
PTPRF-215ENST00000496447 DGCR14Q96DF8 476 aaKnown RBP13.17□□□□□ -0.3
PTPRF-215ENST00000496447 MARK4Q96L34 752 aa13.17□□□□□ -0.3
PTPRF-215ENST00000496447 GLOD4Q9HC38 313 aa13.17□□□□□ -0.3
PTPRF-215ENST00000496447 INTS7Q9NVH2 962 aaKnown RBP13.17□□□□□ -0.3
PTPRF-215ENST00000496447 DMTF1Q9Y222 760 aa13.17□□□□□ -0.3
PTPRF-215ENST00000496447 GTPBP1O00178 669 aaKnown RBP13.16□□□□□ -0.3
PTPRF-215ENST00000496447 CLOCKO15516 846 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 SLC25A12O75746 678 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 ADRA1BP35368 520 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 CXCR3P49682 368 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 ZNF276Q8N554 614 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 PCDH20Q8N6Y1 951 aaKnown RBP13.16□□□□□ -0.3
PTPRF-215ENST00000496447 CD101Q93033 1021 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 ACAT2Q9BWD1 397 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 MRPS17Q9Y2R5 130 aaKnown RBP13.16□□□□□ -0.3
PTPRF-215ENST00000496447 ZNF780BQ9Y6R6 833 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 STBD1O95210 358 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 PRNPP04156 253 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 SQLEQ14534 574 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 CPSF6Q16630 551 aaKnown RBP eCLIP13.16□□□□□ -0.3
PTPRF-215ENST00000496447 C19orf18Q8NEA5 215 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 RSL24D1Q9UHA3 163 aaKnown RBP13.16□□□□□ -0.3
PTPRF-215ENST00000496447 EVLQ9UI08 416 aaPredicted RBP13.16□□□□□ -0.3
PTPRF-215ENST00000496447 VPS4AQ9UN37 437 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 CORO2BQ9UQ03 480 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 MAFBQ9Y5Q3 323 aaPredicted RBP13.16□□□□□ -0.3
PTPRF-215ENST00000496447 GLYATL1P3A0A0U1RQE8 302 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 ITGA2BP08514 1039 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 TSPAN8P19075 237 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 MAPKAPK3Q16644 382 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 UBE2R2Q712K3 238 aaPredicted RBP13.16□□□□□ -0.3
PTPRF-215ENST00000496447 GALNT15Q8N3T1 639 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 ZNF398Q8TD17 642 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 BAP1Q92560 729 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 LRMDAQ9H2I8 198 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 TRMT13Q9NUP7 481 aaKnown RBP13.16□□□□□ -0.3
PTPRF-215ENST00000496447 WDR37Q9Y2I8 494 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 ARL2P36404 184 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 HK2P52789 917 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 XIAPP98170 497 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 DGUOKQ16854 277 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 PPP2R2DQ66LE6 453 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 RFWD3Q6PCD5 774 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 ADGRG2Q8IZP9 1017 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 SPATA6LQ8N4H0 392 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 GIPC3Q8TF64 312 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 IRGQQ8WZA9 623 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 E9PAM4 449 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 ALOX5P09917 674 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 PKNOX1P55347 436 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 MTAPQ13126 283 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 PTPN20Q4JDL3 420 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 R3HCC1LQ7Z5L2 792 aaKnown RBP13.16□□□□□ -0.3
PTPRF-215ENST00000496447 OR8H2Q8N162 312 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 PIWIL2Q8TC59 973 aaKnown RBP13.16□□□□□ -0.3
PTPRF-215ENST00000496447 ASZ1Q8WWH4 475 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 C9orf16Q9BUW7 83 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 ANAPC2Q9UJX6 822 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 TPRKBQ9Y3C4 175 aa13.16□□□□□ -0.3
PTPRF-215ENST00000496447 SOWAHBA6NEL2 793 aa13.15□□□□□ -0.3
PTPRF-215ENST00000496447 PROCP04070 461 aa13.15□□□□□ -0.3
PTPRF-215ENST00000496447 TSPAN19P0C672 248 aa13.15□□□□□ -0.3
PTPRF-215ENST00000496447 HGFP14210 728 aa13.15□□□□□ -0.3
PTPRF-215ENST00000496447 ITGADQ13349 1161 aa13.15□□□□□ -0.3
PTPRF-215ENST00000496447 PDK3Q15120 406 aa13.15□□□□□ -0.3
PTPRF-215ENST00000496447 ZNF549Q6P9A3 640 aa13.15□□□□□ -0.3
PTPRF-215ENST00000496447 SCIMPQ6UWF3 145 aa13.15□□□□□ -0.3
PTPRF-215ENST00000496447 KRT77Q7Z794 578 aa13.15□□□□□ -0.3
PTPRF-215ENST00000496447 NDRG1Q92597 394 aaKnown RBP13.15□□□□□ -0.3
PTPRF-215ENST00000496447 AK5Q9Y6K8 562 aa13.15□□□□□ -0.3
PTPRF-215ENST00000496447 OR6B1O95007 311 aa13.15□□□□□ -0.3
PTPRF-215ENST00000496447 SEC13P55735 322 aa13.15□□□□□ -0.3
PTPRF-215ENST00000496447 MBTD1Q05BQ5 628 aa13.15□□□□□ -0.3
PTPRF-215ENST00000496447 RINLQ6ZS11 566 aa13.15□□□□□ -0.3
PTPRF-215ENST00000496447 C17orf64Q86WR6 236 aa13.15□□□□□ -0.3
PTPRF-215ENST00000496447 ADHFE1Q8IWW8 467 aa13.15□□□□□ -0.3
PTPRF-215ENST00000496447 FEM1CQ96JP0 617 aa13.15□□□□□ -0.3
PTPRF-215ENST00000496447 ACBD6Q9BR61 282 aa13.15□□□□□ -0.3
PTPRF-215ENST00000496447 LEF1Q9UJU2 399 aaPredicted RBP13.15□□□□□ -0.3
PTPRF-215ENST00000496447 CBX6O95503 412 aa13.15□□□□□ -0.3
PTPRF-215ENST00000496447 VIPP01282 170 aa13.15□□□□□ -0.3
PTPRF-215ENST00000496447 PTSQ03393 145 aa13.15□□□□□ -0.3
PTPRF-215ENST00000496447 FCHO2Q0JRZ9 810 aa13.15□□□□□ -0.3
PTPRF-215ENST00000496447 XYLT1Q86Y38 959 aa13.15□□□□□ -0.3
PTPRF-215ENST00000496447 HDHD2Q9H0R4 259 aa13.15□□□□□ -0.3
PTPRF-215ENST00000496447 RPS6KA6Q9UK32 745 aa13.15□□□□□ -0.3
PTPRF-215ENST00000496447 COG5Q9UP83 839 aa13.15□□□□□ -0.3
PTPRF-215ENST00000496447 ERVW-1Q9UQF0 538 aa13.15□□□□□ -0.3
PTPRF-215ENST00000496447 COQ6Q9Y2Z9 468 aa13.15□□□□□ -0.3
PTPRF-215ENST00000496447 RAI2Q9Y5P3 530 aa13.15□□□□□ -0.3
PTPRF-215ENST00000496447 MED26O95402 600 aa13.15□□□□□ -0.3
PTPRF-215ENST00000496447 PCCBP05166 539 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms