RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 NRDCO43847 1150 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 RNASEH1O60930 286 aaKnown RBP6.81□□□□□ -1.32
VPS52-219ENST00000493379 PALMO75781 387 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 RPP40O75818 363 aaKnown RBP6.81□□□□□ -1.32
VPS52-219ENST00000493379 ALBP02768 609 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 PRNPP04156 253 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 CD6P30203 668 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 CHRNA3P32297 505 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 SLC8A1P32418 973 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 HOXD12P35452 270 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 HSPA9P38646 679 aaKnown RBP6.81□□□□□ -1.32
VPS52-219ENST00000493379 PXNP49023 591 aaPredicted RBP6.81□□□□□ -1.32
VPS52-219ENST00000493379 RENBPP51606 427 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 SUOXP51687 545 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 RWDD2BP57060 319 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 SNRPD1P62314 119 aaKnown RBP6.81□□□□□ -1.32
VPS52-219ENST00000493379 ADCY2Q08462 1091 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 CYP4F3Q08477 520 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 PPIDQ08752 370 aaKnown RBP6.81□□□□□ -1.32
VPS52-219ENST00000493379 KLF1Q13351 362 aaPredicted RBP6.81□□□□□ -1.32
VPS52-219ENST00000493379 XRCC4Q13426 336 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 TFDP2Q14188 446 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 KRT81Q14533 505 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 GRM3Q14832 879 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 CST6Q15828 149 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 FAM46CQ5VWP2 391 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 ANO7Q6IWH7 933 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 NEK5Q6P3R8 708 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 LINGO4Q6UY18 593 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 CCNI2Q6ZMN8 369 aaPredicted RBP6.81□□□□□ -1.32
VPS52-219ENST00000493379 SPOCD1Q6ZMY3 1216 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 ARHGAP36Q6ZRI8 547 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 C1orf229Q6ZS94 237 aaPredicted RBP6.81□□□□□ -1.32
VPS52-219ENST00000493379 BBS12Q6ZW61 710 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 BZW1Q7L1Q6 419 aaKnown RBP6.81□□□□□ -1.32
VPS52-219ENST00000493379 REC114Q7Z4M0 266 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 DSG4Q86SJ6 1040 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 KIAA1328Q86T90 577 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 STK40Q8N2I9 435 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 CBARPQ8N350 705 aaPredicted RBP6.81□□□□□ -1.32
VPS52-219ENST00000493379 ZNF366Q8N895 744 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 PNPLA1Q8N8W4 532 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 ATP11CQ8NB49 1132 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 HMGB4Q8WW32 186 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 OR8D1Q8WZ84 308 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 TADA1Q96BN2 335 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 ECHDC3Q96DC8 303 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 RBM41Q96IZ5 413 aaKnown RBP6.81□□□□□ -1.32
VPS52-219ENST00000493379 CELF6Q96J87 481 aaKnown RBP6.81□□□□□ -1.32
VPS52-219ENST00000493379 CCDC114Q96M63 670 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 ZNF641Q96N77 438 aaPredicted RBP6.81□□□□□ -1.32
VPS52-219ENST00000493379 TUBGCP5Q96RT8 1024 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 IL12RB2Q99665 862 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 MGME1Q9BQP7 344 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 HEPHQ9BQS7 1158 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 PABPC3Q9H361 631 aaKnown RBP6.81□□□□□ -1.32
VPS52-219ENST00000493379 GOLPH3Q9H4A6 298 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 SGK2Q9HBY8 427 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 TMEM9BQ9NQ34 198 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 LHX3Q9UBR4 397 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 UBA2Q9UBT2 640 aaPredicted RBP6.81□□□□□ -1.32
VPS52-219ENST00000493379 TRIM10Q9UDY6 481 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 AMFRQ9UKV5 643 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 SARDHQ9UL12 918 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 PPP2R2CQ9Y2T4 447 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 PPIL1Q9Y3C6 166 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 HYOU1Q9Y4L1 999 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 PCDHGA5Q9Y5G8 931 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 ACTL7AQ9Y615 435 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 CAPN6Q9Y6Q1 641 aa6.81□□□□□ -1.32
VPS52-219ENST00000493379 CENPEQ02224 2701 aa6.8□□□□□ -1.32
VPS52-219ENST00000493379 LRRD1A4D1F6 860 aa6.8□□□□□ -1.32
VPS52-219ENST00000493379 PATE3B3GLJ2 98 aa6.8□□□□□ -1.32
VPS52-219ENST00000493379 RNF103O00237 685 aa6.8□□□□□ -1.32
VPS52-219ENST00000493379 TRAFD1O14545 582 aaPredicted RBP6.8□□□□□ -1.32
VPS52-219ENST00000493379 AREL1O15033 823 aa6.8□□□□□ -1.32
VPS52-219ENST00000493379 HTRA2O43464 458 aaPredicted RBP6.8□□□□□ -1.32
VPS52-219ENST00000493379 LATO43561 262 aa6.8□□□□□ -1.32
VPS52-219ENST00000493379 PLRG1O43660 514 aaKnown RBP6.8□□□□□ -1.32
VPS52-219ENST00000493379 AP1G1O43747 822 aa6.8□□□□□ -1.32
VPS52-219ENST00000493379 RHOBTB1O94844 696 aa6.8□□□□□ -1.32
VPS52-219ENST00000493379 TMCC1O94876 653 aa6.8□□□□□ -1.32
VPS52-219ENST00000493379 GSTP1P09211 210 aaKnown RBP6.8□□□□□ -1.32
VPS52-219ENST00000493379 PYGMP11217 842 aa6.8□□□□□ -1.32
VPS52-219ENST00000493379 BCKDHBP21953 392 aa6.8□□□□□ -1.32
VPS52-219ENST00000493379 TGM2P21980 687 aa6.8□□□□□ -1.32
VPS52-219ENST00000493379 DPP6P42658 865 aa6.8□□□□□ -1.32
VPS52-219ENST00000493379 MARCKSL1P49006 195 aa6.8□□□□□ -1.32
VPS52-219ENST00000493379 CCR5P51681 352 aa6.8□□□□□ -1.32
VPS52-219ENST00000493379 CCNHP51946 323 aaPredicted RBP6.8□□□□□ -1.32
VPS52-219ENST00000493379 TAS2R38P59533 333 aa6.8□□□□□ -1.32
VPS52-219ENST00000493379 IFI35P80217 286 aaPredicted RBP6.8□□□□□ -1.32
VPS52-219ENST00000493379 GSTM4Q03013 218 aa6.8□□□□□ -1.32
VPS52-219ENST00000493379 GBE1Q04446 702 aa6.8□□□□□ -1.32
VPS52-219ENST00000493379 SLC10A7Q0GE19 358 aa6.8□□□□□ -1.32
VPS52-219ENST00000493379 CCDC15Q0P6D6 951 aa6.8□□□□□ -1.32
VPS52-219ENST00000493379 SLC14A2Q15849 920 aa6.8□□□□□ -1.32
VPS52-219ENST00000493379 TIGD7Q6NT04 549 aaPredicted RBP6.8□□□□□ -1.32
VPS52-219ENST00000493379 CCDC81Q6ZN84 652 aa6.8□□□□□ -1.32
VPS52-219ENST00000493379 ZSCAN30Q86W11 494 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms