RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 IQCDQ96DY2 449 aa13.25□□□□□ -0.29
HDAC3-213ENST00000492506 SPDL1Q96EA4 605 aa13.25□□□□□ -0.29
HDAC3-213ENST00000492506 ALS2CR12Q96Q35 445 aa13.25□□□□□ -0.29
HDAC3-213ENST00000492506 DESI2Q9BSY9 194 aa13.25□□□□□ -0.29
HDAC3-213ENST00000492506 TM6SF2Q9BZW4 377 aa13.25□□□□□ -0.29
HDAC3-213ENST00000492506 STRADBQ9C0K7 418 aa13.25□□□□□ -0.29
HDAC3-213ENST00000492506 ATP13A1Q9HD20 1204 aa13.25□□□□□ -0.29
HDAC3-213ENST00000492506 RRN3Q9NYV6 651 aa13.25□□□□□ -0.29
HDAC3-213ENST00000492506 SIRPGQ9P1W8 387 aa13.25□□□□□ -0.29
HDAC3-213ENST00000492506 ANKMY1Q9P2S6 941 aa13.25□□□□□ -0.29
HDAC3-213ENST00000492506 GULP1Q9UBP9 304 aa13.25□□□□□ -0.29
HDAC3-213ENST00000492506 RNF14Q9UBS8 474 aa13.25□□□□□ -0.29
HDAC3-213ENST00000492506 PISDQ9UG56 409 aa13.25□□□□□ -0.29
HDAC3-213ENST00000492506 PRAMEF33A0A0G2JMD5 474 aa13.24□□□□□ -0.29
HDAC3-213ENST00000492506 CXorf51AA0A1B0GTR3 108 aa13.24□□□□□ -0.29
HDAC3-213ENST00000492506 SOWAHDA6NJG2 315 aa13.24□□□□□ -0.29
HDAC3-213ENST00000492506 NEMP1O14524 444 aa13.24□□□□□ -0.29
HDAC3-213ENST00000492506 KRT86O43790 486 aa13.24□□□□□ -0.29
HDAC3-213ENST00000492506 PRAMEF10O60809 474 aa13.24□□□□□ -0.29
HDAC3-213ENST00000492506 IMPDH2P12268 514 aa13.24□□□□□ -0.29
HDAC3-213ENST00000492506 ITIH1P19827 911 aa13.24□□□□□ -0.29
HDAC3-213ENST00000492506 BMP6P22004 513 aa13.24□□□□□ -0.29
HDAC3-213ENST00000492506 ETV5P41161 510 aa13.24□□□□□ -0.29
HDAC3-213ENST00000492506 HK3P52790 923 aa13.24□□□□□ -0.29
HDAC3-213ENST00000492506 GNA12Q03113 381 aa13.24□□□□□ -0.29
HDAC3-213ENST00000492506 TLE1Q04724 770 aa13.24□□□□□ -0.29
HDAC3-213ENST00000492506 ZFP36L1Q07352 338 aaKnown RBP13.24□□□□□ -0.29
HDAC3-213ENST00000492506 DYNC1I2Q13409 638 aaKnown RBP13.24□□□□□ -0.29
HDAC3-213ENST00000492506 CMPK2Q5EBM0 449 aa13.24□□□□□ -0.29
HDAC3-213ENST00000492506 ENOSF1Q7L5Y1 443 aa13.24□□□□□ -0.29
HDAC3-213ENST00000492506 BNIPLQ7Z465 357 aa13.24□□□□□ -0.29
HDAC3-213ENST00000492506 ZFAND4Q86XD8 727 aa13.24□□□□□ -0.29
HDAC3-213ENST00000492506 RBM12BQ8IXT5 1001 aaKnown RBP13.24□□□□□ -0.29
HDAC3-213ENST00000492506 FSTL5Q8N475 847 aaPredicted RBP13.24□□□□□ -0.29
HDAC3-213ENST00000492506 TMEM74Q96NL1 305 aa13.24□□□□□ -0.29
HDAC3-213ENST00000492506 CCT8L2Q96SF2 557 aa13.24□□□□□ -0.29
HDAC3-213ENST00000492506 CPEB1Q9BZB8 566 aaKnown RBP13.24□□□□□ -0.29
HDAC3-213ENST00000492506 LRRN3Q9H3W5 708 aa13.24□□□□□ -0.29
HDAC3-213ENST00000492506 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.24□□□□□ -0.29
HDAC3-213ENST00000492506 FOXJ2Q9P0K8 574 aa13.24□□□□□ -0.29
HDAC3-213ENST00000492506 C15orf41Q9Y2V0 281 aa13.24□□□□□ -0.29
HDAC3-213ENST00000492506 LOXL2Q9Y4K0 774 aa13.24□□□□□ -0.29
HDAC3-213ENST00000492506 CLEC18AA5D8T8 446 aa13.23□□□□□ -0.29
HDAC3-213ENST00000492506 PPP1R3GB7ZBB8 358 aa13.23□□□□□ -0.29
HDAC3-213ENST00000492506 C9orf172C9J069 976 aa13.23□□□□□ -0.29
HDAC3-213ENST00000492506 TOR1BO14657 336 aa13.23□□□□□ -0.29
HDAC3-213ENST00000492506 MMP20O60882 483 aa13.23□□□□□ -0.29
HDAC3-213ENST00000492506 SRGAP2O75044 1071 aa13.23□□□□□ -0.29
HDAC3-213ENST00000492506 SMNDC1O75940 238 aaKnown RBP eCLIP13.23□□□□□ -0.29
HDAC3-213ENST00000492506 JMJD7P0C870 316 aa13.23□□□□□ -0.29
HDAC3-213ENST00000492506 ITIH2P19823 946 aa13.23□□□□□ -0.29
HDAC3-213ENST00000492506 NR1D1P20393 614 aa13.23□□□□□ -0.29
HDAC3-213ENST00000492506 ACVRL1P37023 503 aa13.23□□□□□ -0.29
HDAC3-213ENST00000492506 MDH1P40925 334 aaKnown RBP13.23□□□□□ -0.29
HDAC3-213ENST00000492506 SULT1E1P49888 294 aa13.23□□□□□ -0.29
HDAC3-213ENST00000492506 IFI16Q16666 785 aaKnown RBP13.23□□□□□ -0.29
HDAC3-213ENST00000492506 TSR1Q2NL82 804 aaKnown RBP13.23□□□□□ -0.29
HDAC3-213ENST00000492506 ALG11Q2TAA5 492 aa13.23□□□□□ -0.29
HDAC3-213ENST00000492506 ANKRD20A8PQ5CZ79 823 aa13.23□□□□□ -0.29
HDAC3-213ENST00000492506 LRRC73Q5JTD7 316 aa13.23□□□□□ -0.29
HDAC3-213ENST00000492506 MANEAQ5SRI9 462 aa13.23□□□□□ -0.29
HDAC3-213ENST00000492506 CLEC18BQ6UXF7 455 aa13.23□□□□□ -0.29
HDAC3-213ENST00000492506 CACNA2D3Q8IZS8 1091 aa13.23□□□□□ -0.29
HDAC3-213ENST00000492506 CLEC18CQ8NCF0 446 aa13.23□□□□□ -0.29
HDAC3-213ENST00000492506 CFAP61Q8NHU2 1237 aa13.23□□□□□ -0.29
HDAC3-213ENST00000492506 SHC3Q92529 594 aa13.23□□□□□ -0.29
HDAC3-213ENST00000492506 TSACCQ96A04 125 aaPredicted RBP13.23□□□□□ -0.29
HDAC3-213ENST00000492506 TBCBQ99426 244 aa13.23□□□□□ -0.29
HDAC3-213ENST00000492506 EDEM3Q9BZQ6 932 aa13.23□□□□□ -0.29
HDAC3-213ENST00000492506 SLC25A18Q9H1K4 315 aa13.23□□□□□ -0.29
HDAC3-213ENST00000492506 NDFIP2Q9NV92 336 aa13.23□□□□□ -0.29
HDAC3-213ENST00000492506 CTNNAL1Q9UBT7 734 aa13.23□□□□□ -0.29
HDAC3-213ENST00000492506 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.23□□□□□ -0.29
HDAC3-213ENST00000492506 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.23□□□□□ -0.29
HDAC3-213ENST00000492506 SPTAN1Q13813 2472 aaKnown RBP13.23□□□□□ -0.29
HDAC3-213ENST00000492506 TM7SF2O76062 418 aa13.22□□□□□ -0.29
HDAC3-213ENST00000492506 F9P00740 461 aa13.22□□□□□ -0.29
HDAC3-213ENST00000492506 NTRK1P04629 796 aa13.22□□□□□ -0.29
HDAC3-213ENST00000492506 UGT2B4P06133 528 aa13.22□□□□□ -0.29
HDAC3-213ENST00000492506 VIMP08670 466 aaKnown RBP13.22□□□□□ -0.29
HDAC3-213ENST00000492506 ALPIP09923 528 aa13.22□□□□□ -0.29
HDAC3-213ENST00000492506 SLC9A1P19634 815 aa13.22□□□□□ -0.29
HDAC3-213ENST00000492506 PEX5P50542 639 aa13.22□□□□□ -0.29
HDAC3-213ENST00000492506 RNASE9P60153 205 aaKnown RBP13.22□□□□□ -0.29
HDAC3-213ENST00000492506 DEUP1Q05D60 604 aa13.22□□□□□ -0.29
HDAC3-213ENST00000492506 MORC3Q14149 939 aa13.22□□□□□ -0.29
HDAC3-213ENST00000492506 UBAP2LQ14157 1087 aaKnown RBP13.22□□□□□ -0.29
HDAC3-213ENST00000492506 IRF4Q15306 451 aa13.22□□□□□ -0.29
HDAC3-213ENST00000492506 ELOCQ15369 112 aa13.22□□□□□ -0.29
HDAC3-213ENST00000492506 TCEA2Q15560 299 aa13.22□□□□□ -0.29
HDAC3-213ENST00000492506 ARHGAP44Q17R89 818 aa13.22□□□□□ -0.29
HDAC3-213ENST00000492506 SLC25A52Q3SY17 297 aa13.22□□□□□ -0.29
HDAC3-213ENST00000492506 CFAP58Q5T655 872 aa13.22□□□□□ -0.29
HDAC3-213ENST00000492506 ACBD5Q5T8D3 534 aaPredicted RBP13.22□□□□□ -0.29
HDAC3-213ENST00000492506 KCTD16Q68DU8 428 aa13.22□□□□□ -0.29
HDAC3-213ENST00000492506 KLHL10Q6JEL2 608 aa13.22□□□□□ -0.29
HDAC3-213ENST00000492506 TRNP1Q6NT89 227 aa13.22□□□□□ -0.29
HDAC3-213ENST00000492506 TMPRSS9Q7Z410 1059 aa13.22□□□□□ -0.29
HDAC3-213ENST00000492506 ZDHHC17Q8IUH5 632 aa13.22□□□□□ -0.29
HDAC3-213ENST00000492506 HID1Q8IV36 788 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms