RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 ZNF569Q5MCW4 686 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 FAXCQ5TGI0 409 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 RAET1GQ6H3X3 334 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 LAYNQ6UX15 382 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 Q6ZSR6 202 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 BBS12Q6ZW61 710 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 RD3Q7Z3Z2 195 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 IQCHQ86VS3 1027 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 TP53INP2Q8IXH6 220 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 PQLC3Q8N755 202 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 GDAP1Q8TB36 358 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 FAM71BQ8TC56 605 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 BTN2A2Q8WVV5 523 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 NUS1Q96E22 293 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 RBM15Q96T37 977 aaKnown RBP eCLIP8.07□□□□□ -1.12
USP40-216ENST00000485943 MLPHQ9BV36 600 aaPredicted RBP8.07□□□□□ -1.12
USP40-216ENST00000485943 SUDS3Q9H7L9 328 aaPredicted RBP8.07□□□□□ -1.12
USP40-216ENST00000485943 PHPT1Q9NRX4 125 aaPredicted RBP8.07□□□□□ -1.12
USP40-216ENST00000485943 RAD18Q9NS91 495 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 TRMT1Q9NXH9 659 aaKnown RBP8.07□□□□□ -1.12
USP40-216ENST00000485943 SAE1Q9UBE0 346 aaPredicted RBP8.07□□□□□ -1.12
USP40-216ENST00000485943 FAM153AQ9UHL3 310 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 ZNF148Q9UQR1 794 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 CHKBQ9Y259 395 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 EFR3BQ9Y2G0 817 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 FNDC3AQ9Y2H6 1198 aaKnown RBP8.07□□□□□ -1.12
USP40-216ENST00000485943 AAR2Q9Y312 384 aaKnown RBP8.07□□□□□ -1.12
USP40-216ENST00000485943 SNX11Q9Y5W9 270 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 TDRD6O60522 2096 aaKnown RBP8.07□□□□□ -1.12
USP40-216ENST00000485943 RIF1Q5UIP0 2472 aaKnown RBP8.07□□□□□ -1.12
USP40-216ENST00000485943 PLXNA2O75051 1894 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 TP53BP1Q12888 1972 aaPredicted RBP8.06□□□□□ -1.12
USP40-216ENST00000485943 EP300Q09472 2414 aaPredicted RBP8.06□□□□□ -1.12
USP40-216ENST00000485943 DCDC2BA2VCK2 349 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 CFAP69A5D8W1 941 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 C3orf70A6NLC5 250 aaPredicted RBP8.06□□□□□ -1.12
USP40-216ENST00000485943 RNF103O00237 685 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 TOR1BO14657 336 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 SLC30A4O14863 429 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 WNT9AO14904 365 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 ZNF821O75541 412 aaPredicted RBP8.06□□□□□ -1.12
USP40-216ENST00000485943 PGLSO95336 258 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 ASMTLO95671 621 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 CD160O95971 181 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 PRKCGP05129 697 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 PYGLP06737 847 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 ZNF30P17039 623 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 RGRP47804 291 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 MARCKSL1P49006 195 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 LIMK1P53667 647 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 CLDN2P57739 230 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 RPL26P61254 145 aaKnown RBP8.06□□□□□ -1.12
USP40-216ENST00000485943 IFI35P80217 286 aaPredicted RBP8.06□□□□□ -1.12
USP40-216ENST00000485943 SEMG2Q02383 582 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 PPARDQ03181 441 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 SLC14A1Q13336 389 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 PEX6Q13608 980 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 NAA30Q147X3 362 aaPredicted RBP8.06□□□□□ -1.12
USP40-216ENST00000485943 KIF19Q2TAC6 998 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 P3H1Q32P28 736 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 TEX44Q53QW1 395 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 ENPP7Q6UWV6 458 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 B4GALNT4Q76KP1 1039 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 PARGQ86W56 976 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 TMEM139Q8IV31 216 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 MEIOBQ8N635 442 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 IPMKQ8NFU5 416 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 ACTL9Q8TC94 416 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 HPS1Q92902 700 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 TTC25Q96NG3 672 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 QKIQ96PU8 341 aaKnown RBP eCLIP8.06□□□□□ -1.122e-14■■■■■ 28.4
USP40-216ENST00000485943 ELF4Q99607 663 aaPredicted RBP8.06□□□□□ -1.12
USP40-216ENST00000485943 IL12RB2Q99665 862 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 FRMD8P1Q9BZ68 369 aaPredicted RBP8.06□□□□□ -1.12
USP40-216ENST00000485943 SAP130Q9H0E3 1048 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 SLC25A51Q9H1U9 297 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 WDR26Q9H7D7 661 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 GLOD4Q9HC38 313 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 CAPN10Q9HC96 672 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 HOMER3Q9NSC5 361 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 UBP1Q9NZI7 540 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 B4GALT6Q9UBX8 382 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 KLQ9UEF7 1012 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 FTSJ1Q9UET6 329 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 RPL26L1Q9UNX3 145 aaKnown RBP8.06□□□□□ -1.12
USP40-216ENST00000485943 COQ6Q9Y2Z9 468 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 REXO2Q9Y3B8 237 aaKnown RBP8.06□□□□□ -1.12
USP40-216ENST00000485943 PKP3Q9Y446 797 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 HS3ST3A1Q9Y663 406 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 CAPN6Q9Y6Q1 641 aa8.06□□□□□ -1.12
USP40-216ENST00000485943 TNRC6BQ9UPQ9 1833 aaKnown RBP8.06□□□□□ -1.12
USP40-216ENST00000485943 PSMD3O43242 534 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 ZW10O43264 779 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 LATO43561 262 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 RECQL5O94762 991 aaPredicted RBP8.05□□□□□ -1.12
USP40-216ENST00000485943 TNFP01375 233 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 ANXA6P08133 673 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 PYGMP11217 842 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 PECAM1P16284 738 aaPredicted RBP8.05□□□□□ -1.12
USP40-216ENST00000485943 TSHRP16473 764 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms