RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, human

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGN1-215	ENST00000485550	CSNK1D	P48730	415 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	ZNF165	P49910	485 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	PEX5	P50542	639 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	BLK	P51451	505 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	SUOX	P51687	545 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	SRP54	P61011	504 aa	Known RBP	10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	IGFBP7	Q16270	282 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	SKIDA1	Q1XH10	827 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	SMTNL2	Q2TAL5	461 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	C4orf17	Q53FE4	359 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	AFMID	Q63HM1	303 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	PPP1R2P3	Q6NXS1	205 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	CAVIN1	Q6NZI2	390 aa	Known RBP	10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	BRAT1	Q6PJG6	821 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	CYP4V2	Q6ZWL3	525 aa	Predicted RBP	10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	B3GNT8	Q7Z7M8	397 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	FBXO39	Q8N4B4	442 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	PCDH19	Q8TAB3	1148 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	HSPH1	Q92598	858 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	TUBGCP5	Q96RT8	1024 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	SEMA3C	Q99985	751 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	CCDC3	Q9BQI4	270 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	BPIFA3	Q9BQP9	254 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	EDEM3	Q9BZQ6	932 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	SLC25A18	Q9H1K4	315 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	ATP13A3	Q9H7F0	1226 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	MRPL40	Q9NQ50	206 aa	Known RBP	10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	ETNK2	Q9NVF9	386 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	AIPL1	Q9NZN9	384 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	KL	Q9UEF7	1012 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	MOSPD1	Q9UJG1	213 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550	GPR34	Q9UPC5	381 aa		10.62	□□□□□ -0.71
HMGN1-215	ENST00000485550		A0A1B0GTH6	734 aa		10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550		A0A1W2PQC6	194 aa		10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	TMEM202	A6NGA9	273 aa		10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	TMEM110-MUSTN1	A8MSY1	372 aa		10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	EIF3CL	B5ME19	914 aa	Known RBP	10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	TOR1B	O14657	336 aa		10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	RASGRP1	O95267	797 aa		10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	SERPINC1	P01008	464 aa		10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	TNF	P01375	233 aa		10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	ALPI	P09923	528 aa		10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	SFTPC	P11686	197 aa		10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	WT1	P19544	449 aa	Predicted RBP	10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	PRKCI	P41743	596 aa		10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	INHBC	P55103	352 aa		10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	IL10RB	Q08334	325 aa		10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	SLC10A7	Q0GE19	358 aa		10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	RALGDS	Q12967	914 aa		10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	LBR	Q14739	615 aa	Known RBP	10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	NFATC4	Q14934	902 aa		10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	CLCA4	Q14CN2	919 aa		10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	ELOC	Q15369	112 aa		10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	MANEA	Q5SRI9	462 aa		10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	DENND2C	Q68D51	928 aa		10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	LIPI	Q6XZB0	460 aa		10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	RAB11FIP2	Q7L804	512 aa		10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	SFTPA2	Q8IWL1	248 aa		10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	FSTL5	Q8N475	847 aa	Predicted RBP	10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	KY	Q8NBH2	561 aa		10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	PDCD6IP	Q8WUM4	868 aa	Known RBP	10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	CPLX3	Q8WVH0	158 aa		10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	HTR3C	Q8WXA8	447 aa		10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	SCG3	Q8WXD2	468 aa	Known RBP	10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	NAT6	Q93015	286 aa		10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	PDXP	Q96GD0	296 aa		10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	LIN37	Q96GY3	246 aa	Predicted RBP	10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	BTBD6	Q96KE9	485 aa		10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	WDR92	Q96MX6	357 aa		10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	EIF3C	Q99613	913 aa	Known RBP	10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	FOXP3	Q9BZS1	431 aa		10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	EPN3	Q9H201	632 aa		10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	SUDS3	Q9H7L9	328 aa	Predicted RBP	10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	PISD	Q9UG56	409 aa		10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	RABGEF1	Q9UJ41	708 aa		10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	PCDHGC4	Q9Y5F7	938 aa		10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	PCDHGA7	Q9Y5G6	932 aa		10.61	□□□□□ -0.71
HMGN1-215	ENST00000485550	RP1L1	Q8IWN7	2480 aa	Predicted RBP	10.6	□□□□□ -0.71
HMGN1-215	ENST00000485550		H3BRJ5	948 aa		10.6	□□□□□ -0.71
HMGN1-215	ENST00000485550	NTN3	O00634	580 aa	Predicted RBP	10.6	□□□□□ -0.71
HMGN1-215	ENST00000485550	TRAFD1	O14545	582 aa	Predicted RBP	10.6	□□□□□ -0.71
HMGN1-215	ENST00000485550	ELFN1	P0C7U0	828 aa		10.6	□□□□□ -0.71
HMGN1-215	ENST00000485550	LIPC	P11150	499 aa		10.6	□□□□□ -0.71
HMGN1-215	ENST00000485550	GM2A	P17900	193 aa		10.6	□□□□□ -0.71
HMGN1-215	ENST00000485550	ARL4A	P40617	200 aa		10.6	□□□□□ -0.71
HMGN1-215	ENST00000485550	HCAR3	P49019	387 aa		10.6	□□□□□ -0.71
HMGN1-215	ENST00000485550	MAX	P61244	160 aa		10.6	□□□□□ -0.71
HMGN1-215	ENST00000485550	POLR2L	P62875	67 aa	Known RBP	10.6	□□□□□ -0.71
HMGN1-215	ENST00000485550	CCL7	P80098	99 aa		10.6	□□□□□ -0.71
HMGN1-215	ENST00000485550	NSUN2	Q08J23	767 aa	Known RBP eCLIP	10.6	□□□□□ -0.71
HMGN1-215	ENST00000485550	MTM1	Q13496	603 aa		10.6	□□□□□ -0.71
HMGN1-215	ENST00000485550	DPYS	Q14117	519 aa		10.6	□□□□□ -0.71
HMGN1-215	ENST00000485550	ZNF235	Q14590	738 aa		10.6	□□□□□ -0.71
HMGN1-215	ENST00000485550	RFTN1	Q14699	578 aa	Predicted RBP	10.6	□□□□□ -0.71
HMGN1-215	ENST00000485550	NR1I3	Q14994	352 aa		10.6	□□□□□ -0.71
HMGN1-215	ENST00000485550	ACOX1	Q15067	660 aa		10.6	□□□□□ -0.71
HMGN1-215	ENST00000485550	TDRD12	Q587J7	1177 aa	Known RBP	10.6	□□□□□ -0.71
HMGN1-215	ENST00000485550	HIST2H2BC	Q6DN03	193 aa		10.6	□□□□□ -0.71
HMGN1-215	ENST00000485550	TXNRD3NB	Q6F5E7	133 aa		10.6	□□□□□ -0.71
HMGN1-215	ENST00000485550	TAF8	Q7Z7C8	310 aa		10.6	□□□□□ -0.71

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