RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	CNTN4	Q8IWV2	1026 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	CHPF	Q8IZ52	775 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	C4orf33	Q8N1A6	199 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	ZNF513	Q8N8E2	541 aa	Predicted RBP	11.23	□□□□□ -0.61
APTX-223	ENST00000479656	OR8D1	Q8WZ84	308 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	ATXN7L3B	Q96GX2	97 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	SERAC1	Q96JX3	654 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	OSBPL1A	Q9BXW6	950 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	MFSD1	Q9H3U5	465 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	PRSS16	Q9NQE7	514 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	POLR3B	Q9NW08	1133 aa	Predicted RBP	11.23	□□□□□ -0.61
APTX-223	ENST00000479656	IL17C	Q9P0M4	197 aa		11.23	□□□□□ -0.61
APTX-223	ENST00000479656	C16orf96	A6NNT2	1141 aa		11.22	□□□□□ -0.61
APTX-223	ENST00000479656	GOLGA8R	I6L899	631 aa		11.22	□□□□□ -0.61
APTX-223	ENST00000479656	KPNA3	O00505	521 aa	Predicted RBP	11.22	□□□□□ -0.61
APTX-223	ENST00000479656	HAUS5	O94927	633 aa		11.22	□□□□□ -0.61
APTX-223	ENST00000479656	EGF	P01133	1207 aa		11.22	□□□□□ -0.61
APTX-223	ENST00000479656	BRAF	P15056	766 aa		11.22	□□□□□ -0.61
APTX-223	ENST00000479656	KRT4	P19013	534 aa		11.22	□□□□□ -0.61
APTX-223	ENST00000479656	PSMA3	P25788	255 aa		11.22	□□□□□ -0.61
APTX-223	ENST00000479656	GABRB3	P28472	473 aa		11.22	□□□□□ -0.61
APTX-223	ENST00000479656	HMGCL	P35914	325 aa		11.22	□□□□□ -0.61
APTX-223	ENST00000479656	KIR2DL1	P43626	348 aa	Predicted RBP	11.22	□□□□□ -0.61
APTX-223	ENST00000479656	METAP1	P53582	386 aa		11.22	□□□□□ -0.61
APTX-223	ENST00000479656	MPP1	Q00013	466 aa		11.22	□□□□□ -0.61
APTX-223	ENST00000479656	ZNF470	Q6ECI4	717 aa		11.22	□□□□□ -0.61
APTX-223	ENST00000479656	BRAT1	Q6PJG6	821 aa		11.22	□□□□□ -0.61
APTX-223	ENST00000479656	TPRG1	Q6ZUI0	275 aa		11.22	□□□□□ -0.61
APTX-223	ENST00000479656	USP45	Q70EL2	814 aa		11.22	□□□□□ -0.61
APTX-223	ENST00000479656	TTC7B	Q86TV6	843 aa		11.22	□□□□□ -0.61
APTX-223	ENST00000479656	RALGPS2	Q86X27	583 aa	Predicted RBP	11.22	□□□□□ -0.61
APTX-223	ENST00000479656	SUGP1	Q8IWZ8	645 aa	Known RBP	11.22	□□□□□ -0.61
APTX-223	ENST00000479656	OTUD6B	Q8N6M0	293 aa		11.22	□□□□□ -0.61
APTX-223	ENST00000479656	C2CD4A	Q8NCU7	369 aa	Predicted RBP	11.22	□□□□□ -0.61
APTX-223	ENST00000479656	OR4L1	Q8NH43	312 aa		11.22	□□□□□ -0.61
APTX-223	ENST00000479656	MDM1	Q8TC05	714 aa		11.22	□□□□□ -0.61
APTX-223	ENST00000479656	CALML6	Q8TD86	181 aa		11.22	□□□□□ -0.61
APTX-223	ENST00000479656	SPOCK2	Q92563	424 aa		11.22	□□□□□ -0.61
APTX-223	ENST00000479656	SRPK1	Q96SB4	655 aa	Known RBP	11.22	□□□□□ -0.61
APTX-223	ENST00000479656	RBBP8	Q99708	897 aa		11.22	□□□□□ -0.61
APTX-223	ENST00000479656	SELENOS	Q9BQE4	189 aa		11.22	□□□□□ -0.61
APTX-223	ENST00000479656	FAM167B	Q9BTA0	163 aa		11.22	□□□□□ -0.61
APTX-223	ENST00000479656	C8orf33	Q9H7E9	229 aa	Predicted RBP	11.22	□□□□□ -0.61
APTX-223	ENST00000479656	KCNK9	Q9NPC2	374 aa		11.22	□□□□□ -0.61
APTX-223	ENST00000479656	PRDM6	Q9NQX0	595 aa		11.22	□□□□□ -0.61
APTX-223	ENST00000479656	NSMCE4A	Q9NXX6	385 aa		11.22	□□□□□ -0.61
APTX-223	ENST00000479656	MARCH4	Q9P2E8	410 aa	Predicted RBP	11.22	□□□□□ -0.61
APTX-223	ENST00000479656	FKBPL	Q9UIM3	349 aa		11.22	□□□□□ -0.61
APTX-223	ENST00000479656	FBXO5	Q9UKT4	447 aa		11.22	□□□□□ -0.61
APTX-223	ENST00000479656	PPM1H	Q9ULR3	514 aa		11.22	□□□□□ -0.61
APTX-223	ENST00000479656	FNDC3A	Q9Y2H6	1198 aa	Known RBP	11.22	□□□□□ -0.61
APTX-223	ENST00000479656	PKP3	Q9Y446	797 aa		11.22	□□□□□ -0.61
APTX-223	ENST00000479656	GOLGA8CP	A6NN73	597 aa		11.21	□□□□□ -0.61
APTX-223	ENST00000479656	CD3EAP	O15446	510 aa	Known RBP	11.21	□□□□□ -0.61
APTX-223	ENST00000479656	SPAG7	O75391	227 aa		11.21	□□□□□ -0.61
APTX-223	ENST00000479656	IL1B	P01584	269 aa		11.21	□□□□□ -0.61
APTX-223	ENST00000479656	PRNP	P04156	253 aa		11.21	□□□□□ -0.61
APTX-223	ENST00000479656	ITGA2B	P08514	1039 aa		11.21	□□□□□ -0.61
APTX-223	ENST00000479656	PRSS56	P0CW18	603 aa		11.21	□□□□□ -0.61
APTX-223	ENST00000479656	ATXN8OS	P0DMR3	200 aa		11.21	□□□□□ -0.61
APTX-223	ENST00000479656	CNTF	P26441	200 aa		11.21	□□□□□ -0.61
APTX-223	ENST00000479656	SPR	P35270	261 aa	Predicted RBP	11.21	□□□□□ -0.61
APTX-223	ENST00000479656	HADHA	P40939	763 aa		11.21	□□□□□ -0.61
APTX-223	ENST00000479656	SLC1A2	P43004	574 aa		11.21	□□□□□ -0.61
APTX-223	ENST00000479656	PTS	Q03393	145 aa		11.21	□□□□□ -0.61
APTX-223	ENST00000479656	ENPP2	Q13822	863 aa		11.21	□□□□□ -0.61
APTX-223	ENST00000479656	ELAVL3	Q14576	367 aa	Known RBP	11.21	□□□□□ -0.61
APTX-223	ENST00000479656	C2orf27A	Q580R0	203 aa		11.21	□□□□□ -0.61
APTX-223	ENST00000479656	ZNF789	Q5FWF6	425 aa		11.21	□□□□□ -0.61
APTX-223	ENST00000479656	FSTL4	Q6MZW2	842 aa		11.21	□□□□□ -0.61
APTX-223	ENST00000479656	KDM7A	Q6ZMT4	941 aa		11.21	□□□□□ -0.61
APTX-223	ENST00000479656	TMIE	Q8NEW7	156 aa		11.21	□□□□□ -0.61
APTX-223	ENST00000479656	PIP4K2C	Q8TBX8	421 aa		11.21	□□□□□ -0.61
APTX-223	ENST00000479656	HCAR2	Q8TDS4	363 aa		11.21	□□□□□ -0.61
APTX-223	ENST00000479656	DNASE1L2	Q92874	299 aa		11.21	□□□□□ -0.61
APTX-223	ENST00000479656	MTBP	Q96DY7	904 aa		11.21	□□□□□ -0.61
APTX-223	ENST00000479656	MCCC1	Q96RQ3	725 aa	Predicted RBP	11.21	□□□□□ -0.61
APTX-223	ENST00000479656	LYSMD1	Q96S90	227 aa		11.21	□□□□□ -0.61
APTX-223	ENST00000479656	SMC6	Q96SB8	1091 aa		11.21	□□□□□ -0.61
APTX-223	ENST00000479656	MCMBP	Q9BTE3	642 aa		11.21	□□□□□ -0.61
APTX-223	ENST00000479656	FBXO6	Q9NRD1	293 aa	Predicted RBP	11.21	□□□□□ -0.61
APTX-223	ENST00000479656	DKK3	Q9UBP4	350 aa		11.21	□□□□□ -0.61
APTX-223	ENST00000479656	B4GALT6	Q9UBX8	382 aa		11.21	□□□□□ -0.61
APTX-223	ENST00000479656	MTO1	Q9Y2Z2	717 aa	Known RBP	11.21	□□□□□ -0.61
APTX-223	ENST00000479656	ACTL7B	Q9Y614	415 aa		11.21	□□□□□ -0.61
APTX-223	ENST00000479656	PRUNE2	Q8WUY3	3088 aa		11.21	□□□□□ -0.61
APTX-223	ENST00000479656	MUC22	E2RYF6	1773 aa	Predicted RBP	11.21	□□□□□ -0.61
APTX-223	ENST00000479656	TSPAN11	A1L157	253 aa		11.21	□□□□□ -0.62
APTX-223	ENST00000479656	RFPL1	O75677	317 aa		11.21	□□□□□ -0.62
APTX-223	ENST00000479656	PYGB	P11216	843 aa		11.21	□□□□□ -0.62
APTX-223	ENST00000479656	LHCGR	P22888	699 aa		11.21	□□□□□ -0.62
APTX-223	ENST00000479656	XPA	P23025	273 aa	Predicted RBP	11.21	□□□□□ -0.62
APTX-223	ENST00000479656	MC4R	P32245	332 aa		11.21	□□□□□ -0.62
APTX-223	ENST00000479656	CDKN1C	P49918	316 aa	Predicted RBP	11.21	□□□□□ -0.62
APTX-223	ENST00000479656	LIMK2	P53671	638 aa		11.21	□□□□□ -0.62
APTX-223	ENST00000479656	CSE1L	P55060	971 aa	Known RBP	11.21	□□□□□ -0.62
APTX-223	ENST00000479656	PEX6	Q13608	980 aa		11.21	□□□□□ -0.62
APTX-223	ENST00000479656	MPP2	Q14168	576 aa		11.21	□□□□□ -0.62
APTX-223	ENST00000479656	SEMA3A	Q14563	771 aa		11.21	□□□□□ -0.62
APTX-223	ENST00000479656	TMEM196	Q5HYL7	178 aa		11.21	□□□□□ -0.62

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