RNA–Protein interactions for RNA: ENST00000479525.6

ECHDC1-216, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 5

Gene ECHDC1, Length 1,368 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-216ENST00000479525 HEATR4Q86WZ0 1026 aa17.4■□□□□ 0.38
ECHDC1-216ENST00000479525 NIPA2Q8N8Q9 360 aa17.4■□□□□ 0.38
ECHDC1-216ENST00000479525 TEKT4Q8WW24 435 aa17.4■□□□□ 0.38
ECHDC1-216ENST00000479525 RBM15Q96T37 977 aaKnown RBP eCLIP17.4■□□□□ 0.38
ECHDC1-216ENST00000479525 SEMA3CQ99985 751 aa17.4■□□□□ 0.38
ECHDC1-216ENST00000479525 WDR26Q9H7D7 661 aa17.4■□□□□ 0.38
ECHDC1-216ENST00000479525 PLEKHM1Q9Y4G2 1056 aa17.4■□□□□ 0.38
ECHDC1-216ENST00000479525 ATRXP46100 2492 aa17.4■□□□□ 0.38
ECHDC1-216ENST00000479525 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP17.4■□□□□ 0.38
ECHDC1-216ENST00000479525 PRSS38A1L453 326 aa17.4■□□□□ 0.38
ECHDC1-216ENST00000479525 MYO1FO00160 1098 aa17.4■□□□□ 0.38
ECHDC1-216ENST00000479525 TOR1BO14657 336 aa17.4■□□□□ 0.38
ECHDC1-216ENST00000479525 KLK10O43240 276 aa17.4■□□□□ 0.38
ECHDC1-216ENST00000479525 HEXIM1O94992 359 aaKnown RBP17.4■□□□□ 0.38
ECHDC1-216ENST00000479525 ARSEP51690 589 aa17.4■□□□□ 0.38
ECHDC1-216ENST00000479525 ZNF135P52742 658 aaPredicted RBP17.4■□□□□ 0.38
ECHDC1-216ENST00000479525 MAZP56270 477 aaKnown RBP17.4■□□□□ 0.38
ECHDC1-216ENST00000479525 KIAA1024LP59773 190 aa17.4■□□□□ 0.38
ECHDC1-216ENST00000479525 POLR2LP62875 67 aaKnown RBP17.4■□□□□ 0.38
ECHDC1-216ENST00000479525 ZFYVE27Q5T4F4 411 aa17.4■□□□□ 0.38
ECHDC1-216ENST00000479525 ARHGAP40Q5TG30 622 aa17.4■□□□□ 0.38
ECHDC1-216ENST00000479525 Q6ZVL8 140 aa17.4■□□□□ 0.38
ECHDC1-216ENST00000479525 B4GALNT4Q76KP1 1039 aa17.4■□□□□ 0.38
ECHDC1-216ENST00000479525 PATE1Q8WXA2 126 aa17.4■□□□□ 0.38
ECHDC1-216ENST00000479525 SCG3Q8WXD2 468 aaKnown RBP17.4■□□□□ 0.38
ECHDC1-216ENST00000479525 SYN2Q92777 582 aaPredicted RBP17.4■□□□□ 0.38
ECHDC1-216ENST00000479525 NAT6Q93015 286 aa17.4■□□□□ 0.38
ECHDC1-216ENST00000479525 HIC2Q96JB3 615 aa17.4■□□□□ 0.38
ECHDC1-216ENST00000479525 TBATAQ96M53 351 aa17.4■□□□□ 0.38
ECHDC1-216ENST00000479525 CARS2Q9HA77 564 aaKnown RBP17.4■□□□□ 0.38
ECHDC1-216ENST00000479525 NCKIPSDQ9NZQ3 722 aa17.4■□□□□ 0.38
ECHDC1-216ENST00000479525 NENFQ9UMX5 172 aa17.4■□□□□ 0.38
ECHDC1-216ENST00000479525 BZW2Q9Y6E2 419 aaKnown RBP17.4■□□□□ 0.38
ECHDC1-216ENST00000479525 ATMQ13315 3056 aa17.39■□□□□ 0.37
ECHDC1-216ENST00000479525 NTN3O00634 580 aaPredicted RBP17.39■□□□□ 0.37
ECHDC1-216ENST00000479525 NOBOXO60393 691 aa17.39■□□□□ 0.37
ECHDC1-216ENST00000479525 TNFSF15O95150 251 aa17.39■□□□□ 0.37
ECHDC1-216ENST00000479525 PGLSO95336 258 aa17.39■□□□□ 0.37
ECHDC1-216ENST00000479525 SERPINB6P35237 376 aa17.39■□□□□ 0.37
ECHDC1-216ENST00000479525 GNPDA1P46926 289 aa17.39■□□□□ 0.37
ECHDC1-216ENST00000479525 GBE1Q04446 702 aa17.39■□□□□ 0.37
ECHDC1-216ENST00000479525 RAET1GQ6H3X3 334 aa17.39■□□□□ 0.37
ECHDC1-216ENST00000479525 ZNF248Q8NDW4 579 aa17.39■□□□□ 0.37
ECHDC1-216ENST00000479525 NSMCE1Q8WV22 266 aa17.39■□□□□ 0.37
ECHDC1-216ENST00000479525 KCNE4Q8WWG9 221 aa17.39■□□□□ 0.37
ECHDC1-216ENST00000479525 ZNF578Q96N58 590 aaPredicted RBP17.39■□□□□ 0.37
ECHDC1-216ENST00000479525 DPEP2Q9H4A9 486 aa17.39■□□□□ 0.37
ECHDC1-216ENST00000479525 SPATS2LQ9NUQ6 558 aaKnown RBP17.39■□□□□ 0.37
ECHDC1-216ENST00000479525 CHKBQ9Y259 395 aa17.39■□□□□ 0.37
ECHDC1-216ENST00000479525 ST14Q9Y5Y6 855 aa17.39■□□□□ 0.37
ECHDC1-216ENST00000479525 RNF215Q9Y6U7 377 aa17.39■□□□□ 0.37
ECHDC1-216ENST00000479525 EIF4E1BA6NMX2 242 aaKnown RBP17.38■□□□□ 0.37
ECHDC1-216ENST00000479525 SOCS5O75159 536 aa17.38■□□□□ 0.37
ECHDC1-216ENST00000479525 KRT10P13645 584 aa17.38■□□□□ 0.37
ECHDC1-216ENST00000479525 RBMS1P29558 406 aaKnown RBP17.38■□□□□ 0.37
ECHDC1-216ENST00000479525 TRIM23P36406 574 aa17.38■□□□□ 0.37
ECHDC1-216ENST00000479525 SLC10A2Q12908 348 aaPredicted RBP17.38■□□□□ 0.37
ECHDC1-216ENST00000479525 ANKRD20A8PQ5CZ79 823 aa17.38■□□□□ 0.37
ECHDC1-216ENST00000479525 ARMC12Q5T9G4 340 aa17.38■□□□□ 0.37
ECHDC1-216ENST00000479525 SPECC1LQ69YQ0 1117 aa17.38■□□□□ 0.37
ECHDC1-216ENST00000479525 MARK2Q7KZI7 788 aaKnown RBP17.38■□□□□ 0.37
ECHDC1-216ENST00000479525 TMPRSS9Q7Z410 1059 aa17.38■□□□□ 0.37
ECHDC1-216ENST00000479525 BBS5Q8N3I7 341 aa17.38■□□□□ 0.37
ECHDC1-216ENST00000479525 KCTD6Q8NC69 237 aa17.38■□□□□ 0.37
ECHDC1-216ENST00000479525 GPR156Q8NFN8 814 aa17.38■□□□□ 0.37
ECHDC1-216ENST00000479525 PIH1D2Q8WWB5 315 aa17.38■□□□□ 0.37
ECHDC1-216ENST00000479525 SCAMP4Q969E2 229 aa17.38■□□□□ 0.37
ECHDC1-216ENST00000479525 DTD2Q96FN9 168 aa17.38■□□□□ 0.37
ECHDC1-216ENST00000479525 GFM1Q96RP9 751 aaKnown RBP17.38■□□□□ 0.37
ECHDC1-216ENST00000479525 AGAP2Q99490 1192 aa17.38■□□□□ 0.37
ECHDC1-216ENST00000479525 CEP41Q9BYV8 373 aa17.38■□□□□ 0.37
ECHDC1-216ENST00000479525 LRRN3Q9H3W5 708 aa17.38■□□□□ 0.37
ECHDC1-216ENST00000479525 SPTLC3Q9NUV7 552 aa17.38■□□□□ 0.37
ECHDC1-216ENST00000479525 PHTF1Q9UMS5 762 aa17.38■□□□□ 0.37
ECHDC1-216ENST00000479525 SUFUQ9UMX1 484 aa17.38■□□□□ 0.37
ECHDC1-216ENST00000479525 TMEM98Q9Y2Y6 226 aa17.38■□□□□ 0.37
ECHDC1-216ENST00000479525 DGKBQ9Y6T7 804 aa17.38■□□□□ 0.37
ECHDC1-216ENST00000479525 D6RAR5 112 aa17.37■□□□□ 0.37
ECHDC1-216ENST00000479525 HLA-DQB2P05538 268 aa17.37■□□□□ 0.37
ECHDC1-216ENST00000479525 CYP2A6P11509 494 aaPredicted RBP17.37■□□□□ 0.37
ECHDC1-216ENST00000479525 TNNT1P13805 278 aa17.37■□□□□ 0.37
ECHDC1-216ENST00000479525 HSPA9P38646 679 aaKnown RBP17.37■□□□□ 0.37
ECHDC1-216ENST00000479525 GARSP41250 739 aaKnown RBP17.37■□□□□ 0.37
ECHDC1-216ENST00000479525 CDK3Q00526 305 aa17.37■□□□□ 0.37
ECHDC1-216ENST00000479525 NIPAL4Q0D2K0 466 aa17.37■□□□□ 0.37
ECHDC1-216ENST00000479525 SRSF6Q13247 344 aaKnown RBP17.37■□□□□ 0.37
ECHDC1-216ENST00000479525 ARHGEF7Q14155 803 aa17.37■□□□□ 0.37
ECHDC1-216ENST00000479525 MESDQ14696 234 aa17.37■□□□□ 0.37
ECHDC1-216ENST00000479525 HADHQ16836 314 aaKnown RBP17.37■□□□□ 0.37
ECHDC1-216ENST00000479525 LRRC66Q68CR7 880 aa17.37■□□□□ 0.37
ECHDC1-216ENST00000479525 SLC30A9Q6PML9 568 aa17.37■□□□□ 0.37
ECHDC1-216ENST00000479525 NRROSQ86YC3 692 aa17.37■□□□□ 0.37
ECHDC1-216ENST00000479525 CCNJLQ8IV13 435 aa17.37■□□□□ 0.37
ECHDC1-216ENST00000479525 PQLC3Q8N755 202 aa17.37■□□□□ 0.37
ECHDC1-216ENST00000479525 ATL2Q8NHH9 583 aa17.37■□□□□ 0.37
ECHDC1-216ENST00000479525 TPCN2Q8NHX9 752 aa17.37■□□□□ 0.37
ECHDC1-216ENST00000479525 RAPGEF5Q92565 580 aa17.37■□□□□ 0.37
ECHDC1-216ENST00000479525 SLC46A1Q96NT5 459 aa17.37■□□□□ 0.37
ECHDC1-216ENST00000479525 CHP1Q99653 195 aa17.37■□□□□ 0.37
ECHDC1-216ENST00000479525 RBM22Q9NW64 420 aaKnown RBP eCLIP17.37■□□□□ 0.377e-6■■■■□ 24.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms