RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 MMRN2Q9H8L6 949 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 INTS10Q9NVR2 710 aaKnown RBP4.28□□□□□ -1.72
VPS13D-207ENST00000476169 MTPAPQ9NVV4 582 aaKnown RBP eCLIP4.28□□□□□ -1.72
VPS13D-207ENST00000476169 TMEM248Q9NWD8 314 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 GAR1Q9NY12 217 aaKnown RBP4.28□□□□□ -1.72
VPS13D-207ENST00000476169 NLKQ9UBE8 527 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 CPSF3Q9UKF6 684 aaKnown RBP4.28□□□□□ -1.72
VPS13D-207ENST00000476169 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.28□□□□□ -1.72
VPS13D-207ENST00000476169 EPN1Q9Y6I3 576 aaPredicted RBP4.28□□□□□ -1.72
VPS13D-207ENST00000476169 MAU2Q9Y6X3 613 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 GPR75-ASB3A0A0A6YYF3 556 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 TCRBV7S3A2A0A539 114 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 MCIDASD6RGH6 385 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 NDC80O14777 642 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 SLC25A17O43808 307 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 PRPSAP2O60256 369 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 CAMTA2O94983 1202 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 SERPINC1P01008 464 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 TFP02787 698 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 INHBAP08476 426 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 RFPL3SP0C7P2 107 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 FCGR2AP12318 317 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 SRCP12931 536 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 EEF2P13639 858 aaKnown RBP4.27□□□□□ -1.73
VPS13D-207ENST00000476169 ZNF182P17025 639 aaPredicted RBP4.27□□□□□ -1.73
VPS13D-207ENST00000476169 GJA1P17302 382 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 TCEA1P23193 301 aaKnown RBP4.27□□□□□ -1.73
VPS13D-207ENST00000476169 ZNF84P51523 738 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 ADPRHP54922 357 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 SLC12A3P55017 1021 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 UBASH3AP57075 661 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 ARF5P84085 180 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 DMWDQ09019 674 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 LASP1Q14847 261 aaKnown RBP4.27□□□□□ -1.73
VPS13D-207ENST00000476169 ZNF169Q14929 603 aaPredicted RBP4.27□□□□□ -1.73
VPS13D-207ENST00000476169 ME3Q16798 604 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 SPATS1Q496A3 300 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 ANKRD20A4Q4UJ75 823 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 ANKRD20A8PQ5CZ79 823 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 ANKRD20A2Q5SQ80 823 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 TSTD2Q5T7W7 516 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 ANKRD20A1Q5TYW2 823 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 ANKRD20A3Q5VUR7 823 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 KRT79Q5XKE5 535 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 CEP85Q6P2H3 762 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 CFAP77Q6ZQR2 320 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 LINC00696Q6ZRV3 163 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 SPATA21Q7Z572 469 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 SPATA19Q7Z5L4 167 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 GRASPQ7Z6J2 395 aaPredicted RBP4.27□□□□□ -1.73
VPS13D-207ENST00000476169 CENPVQ7Z7K6 275 aaPredicted RBP4.27□□□□□ -1.73
VPS13D-207ENST00000476169 NEK8Q86SG6 692 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 LURAP1LQ8IV03 231 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 VRK3Q8IV63 474 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 SCYL3Q8IZE3 742 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 ATAD1Q8NBU5 361 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 HJURPQ8NCD3 748 aaPredicted RBP4.27□□□□□ -1.73
VPS13D-207ENST00000476169 PSMA8Q8TAA3 256 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 FAM110DQ8TAY7 271 aaPredicted RBP4.27□□□□□ -1.73
VPS13D-207ENST00000476169 SEPT1Q8WYJ6 367 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 SLC9A6Q92581 669 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 CORO2AQ92828 525 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 CELF1Q92879 486 aaKnown RBP4.27□□□□□ -1.73
VPS13D-207ENST00000476169 CENPTQ96BT3 561 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 PDLIM2Q96JY6 352 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 LINC00615Q96LM1 132 aaPredicted RBP4.27□□□□□ -1.73
VPS13D-207ENST00000476169 TMEM68Q96MH6 324 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 INTS14Q96SY0 518 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 PKP4Q99569 1192 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 SPXQ9BT56 116 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 ZNF341Q9BYN7 854 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 KRT23Q9C075 422 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 SLC28A3Q9HAS3 691 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 MAGEE1Q9HCI5 957 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 ARL8BQ9NVJ2 186 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 HAO2Q9NYQ3 351 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 FOXJ2Q9P0K8 574 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 FBXO4Q9UKT5 387 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 LIPT1Q9Y234 373 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 AP1M2Q9Y6Q5 423 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 KAT6AQ92794 2004 aa4.27□□□□□ -1.73
VPS13D-207ENST00000476169 ZNF644Q9H582 1327 aaPredicted RBP4.26□□□□□ -1.73
VPS13D-207ENST00000476169 FAM237AA0A1B0GTK4 181 aa4.26□□□□□ -1.73
VPS13D-207ENST00000476169 TARSL2A2RTX5 802 aaKnown RBP4.26□□□□□ -1.73
VPS13D-207ENST00000476169 TYW5A2RUC4 315 aaKnown RBP4.26□□□□□ -1.73
VPS13D-207ENST00000476169 GRID2IPA4D2P6 1211 aa4.26□□□□□ -1.73
VPS13D-207ENST00000476169 TMEM247A6NEH6 219 aa4.26□□□□□ -1.73
VPS13D-207ENST00000476169 ENO4A6NNW6 628 aa4.26□□□□□ -1.73
VPS13D-207ENST00000476169 BTBD19C9JJ37 291 aa4.26□□□□□ -1.73
VPS13D-207ENST00000476169 NPIPB11E5RHQ5 1161 aa4.26□□□□□ -1.73
VPS13D-207ENST00000476169 H7C1Q1 480 aa4.26□□□□□ -1.73
VPS13D-207ENST00000476169 ASAP2O43150 1006 aa4.26□□□□□ -1.73
VPS13D-207ENST00000476169 SEC14L5O43304 696 aa4.26□□□□□ -1.73
VPS13D-207ENST00000476169 SPRY1O43609 319 aaPredicted RBP4.26□□□□□ -1.73
VPS13D-207ENST00000476169 ZC3H11AO75152 810 aaKnown RBP eCLIP4.26□□□□□ -1.73
VPS13D-207ENST00000476169 ZNF202O95125 648 aa4.26□□□□□ -1.73
VPS13D-207ENST00000476169 HLA-DQA2P01906 255 aa4.26□□□□□ -1.73
VPS13D-207ENST00000476169 ENO1P06733 434 aaKnown RBP4.26□□□□□ -1.73
VPS13D-207ENST00000476169 CYP2D6P10635 497 aa4.26□□□□□ -1.73
VPS13D-207ENST00000476169 PTPN2P17706 415 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms