RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 RALGPS1Q5JS13 557 aa18.81■□□□□ 0.6
CCDC88B-206ENST00000473405 MARC1Q5VT66 337 aa18.81■□□□□ 0.6
CCDC88B-206ENST00000473405 ALKBH5Q6P6C2 394 aaKnown RBP18.81■□□□□ 0.6
CCDC88B-206ENST00000473405 HSD11B1LQ7Z5J1 315 aa18.81■□□□□ 0.6
CCDC88B-206ENST00000473405 TEX26Q8N6G2 289 aa18.81■□□□□ 0.6
CCDC88B-206ENST00000473405 CCL4L1Q8NHW4 92 aa18.81■□□□□ 0.6
CCDC88B-206ENST00000473405 DTD2Q96FN9 168 aa18.81■□□□□ 0.6
CCDC88B-206ENST00000473405 CYP4F12Q9HCS2 524 aa18.81■□□□□ 0.6
CCDC88B-206ENST00000473405 IFNKQ9P0W0 207 aa18.81■□□□□ 0.6
CCDC88B-206ENST00000473405 LUC7L2Q9Y383 392 aaKnown RBP18.81■□□□□ 0.6
CCDC88B-206ENST00000473405 AHCTF1Q8WYP5 2266 aa18.81■□□□□ 0.6
CCDC88B-206ENST00000473405 CCDC187A0A096LP49 1063 aa18.8■□□□□ 0.6
CCDC88B-206ENST00000473405 A0A1W2PQM1 296 aa18.8■□□□□ 0.6
CCDC88B-206ENST00000473405 PRSS38A1L453 326 aa18.8■□□□□ 0.6
CCDC88B-206ENST00000473405 CDRT15L2A8MXV6 281 aa18.8■□□□□ 0.6
CCDC88B-206ENST00000473405 MYO1FO00160 1098 aa18.8■□□□□ 0.6
CCDC88B-206ENST00000473405 NOBOXO60393 691 aa18.8■□□□□ 0.6
CCDC88B-206ENST00000473405 CASP14P31944 242 aa18.8■□□□□ 0.6
CCDC88B-206ENST00000473405 ETV3P41162 512 aa18.8■□□□□ 0.6
CCDC88B-206ENST00000473405 CXADRP78310 365 aa18.8■□□□□ 0.6
CCDC88B-206ENST00000473405 CCL7P80098 99 aa18.8■□□□□ 0.6
CCDC88B-206ENST00000473405 GALNT2Q10471 571 aa18.8■□□□□ 0.6
CCDC88B-206ENST00000473405 IHHQ14623 411 aa18.8■□□□□ 0.6
CCDC88B-206ENST00000473405 NFKBIBQ15653 356 aa18.8■□□□□ 0.6
CCDC88B-206ENST00000473405 CCDC122Q5T0U0 273 aa18.8■□□□□ 0.6
CCDC88B-206ENST00000473405 CERCAMQ5T4B2 595 aa18.8■□□□□ 0.6
CCDC88B-206ENST00000473405 NCBP2-AS2Q69YL0 99 aa18.8■□□□□ 0.6
CCDC88B-206ENST00000473405 OGFOD3Q6PK18 319 aa18.8■□□□□ 0.6
CCDC88B-206ENST00000473405 GPR155Q7Z3F1 870 aa18.8■□□□□ 0.6
CCDC88B-206ENST00000473405 TSPAN33Q86UF1 283 aa18.8■□□□□ 0.6
CCDC88B-206ENST00000473405 HEATR4Q86WZ0 1026 aa18.8■□□□□ 0.6
CCDC88B-206ENST00000473405 BBS5Q8N3I7 341 aa18.8■□□□□ 0.6
CCDC88B-206ENST00000473405 WDR36Q8NI36 951 aaKnown RBP18.8■□□□□ 0.6
CCDC88B-206ENST00000473405 ZNF564Q8TBZ8 553 aaPredicted RBP18.8■□□□□ 0.6
CCDC88B-206ENST00000473405 KCNE4Q8WWG9 221 aa18.8■□□□□ 0.6
CCDC88B-206ENST00000473405 SCRN2Q96FV2 425 aa18.8■□□□□ 0.6
CCDC88B-206ENST00000473405 LIN37Q96GY3 246 aaPredicted RBP18.8■□□□□ 0.6
CCDC88B-206ENST00000473405 TEX101Q9BY14 249 aa18.8■□□□□ 0.6
CCDC88B-206ENST00000473405 NT5MQ9NPB1 228 aa18.8■□□□□ 0.6
CCDC88B-206ENST00000473405 PHTF1Q9UMS5 762 aa18.8■□□□□ 0.6
CCDC88B-206ENST00000473405 SSUH2Q9Y2M2 353 aa18.8■□□□□ 0.6
CCDC88B-206ENST00000473405 A0A0U1RQS6 177 aa18.79■□□□□ 0.6
CCDC88B-206ENST00000473405 B4DGG1 531 aa18.79■□□□□ 0.6
CCDC88B-206ENST00000473405 ATXN7O15265 892 aaPredicted RBP18.79■□□□□ 0.6
CCDC88B-206ENST00000473405 FZD6O60353 706 aa18.79■□□□□ 0.6
CCDC88B-206ENST00000473405 FUCA1P04066 466 aa18.79■□□□□ 0.6
CCDC88B-206ENST00000473405 RPLP0P05388 317 aaKnown RBP18.79■□□□□ 0.6
CCDC88B-206ENST00000473405 RBMS1P29558 406 aaKnown RBP18.79■□□□□ 0.6
CCDC88B-206ENST00000473405 HNRNPH3P31942 346 aaKnown RBP18.79■□□□□ 0.6
CCDC88B-206ENST00000473405 GARSP41250 739 aaKnown RBP18.79■□□□□ 0.6
CCDC88B-206ENST00000473405 PAFAH1B3Q15102 231 aaKnown RBP18.79■□□□□ 0.6
CCDC88B-206ENST00000473405 ATP13A4Q4VNC1 1196 aa18.79■□□□□ 0.6
CCDC88B-206ENST00000473405 DENND2CQ68D51 928 aa18.79■□□□□ 0.6
CCDC88B-206ENST00000473405 ALG1LQ6GMV1 187 aa18.79■□□□□ 0.6
CCDC88B-206ENST00000473405 TAF8Q7Z7C8 310 aa18.79■□□□□ 0.6
CCDC88B-206ENST00000473405 CLEC14AQ86T13 490 aa18.79■□□□□ 0.6
CCDC88B-206ENST00000473405 LRRC49Q8IUZ0 686 aa18.79■□□□□ 0.6
CCDC88B-206ENST00000473405 FAM46DQ8NEK8 389 aa18.79■□□□□ 0.6
CCDC88B-206ENST00000473405 OR6C4Q8NGE1 309 aa18.79■□□□□ 0.6
CCDC88B-206ENST00000473405 NSMCE1Q8WV22 266 aa18.79■□□□□ 0.6
CCDC88B-206ENST00000473405 PTCD2Q8WV60 388 aaKnown RBP18.79■□□□□ 0.6
CCDC88B-206ENST00000473405 PIH1D2Q8WWB5 315 aa18.79■□□□□ 0.6
CCDC88B-206ENST00000473405 SMIM14Q96QK8 99 aa18.79■□□□□ 0.6
CCDC88B-206ENST00000473405 GFM1Q96RP9 751 aaKnown RBP18.79■□□□□ 0.6
CCDC88B-206ENST00000473405 FRMD8Q9BZ67 464 aaPredicted RBP18.79■□□□□ 0.6
CCDC88B-206ENST00000473405 FOXP3Q9BZS1 431 aa18.79■□□□□ 0.6
CCDC88B-206ENST00000473405 CPNE5Q9HCH3 593 aa18.79■□□□□ 0.6
CCDC88B-206ENST00000473405 APPL1Q9UKG1 709 aa18.79■□□□□ 0.6
CCDC88B-206ENST00000473405 PPIL1Q9Y3C6 166 aa18.79■□□□□ 0.6
CCDC88B-206ENST00000473405 TEX51A0A1B0GUA7 166 aa18.78■□□□□ 0.6
CCDC88B-206ENST00000473405 GOLGA6L19H0YKK7 550 aa18.78■□□□□ 0.6
CCDC88B-206ENST00000473405 PSMD11O00231 422 aa18.78■□□□□ 0.6
CCDC88B-206ENST00000473405 MAP3K6O95382 1288 aa18.78■□□□□ 0.6
CCDC88B-206ENST00000473405 PRB1P04280 392 aa18.78■□□□□ 0.6
CCDC88B-206ENST00000473405 CEACAM5P06731 702 aa18.78■□□□□ 0.6
CCDC88B-206ENST00000473405 PDHA1P08559 390 aa18.78■□□□□ 0.6
CCDC88B-206ENST00000473405 CYP2A6P11509 494 aaPredicted RBP18.78■□□□□ 0.6
CCDC88B-206ENST00000473405 GJC1P36383 396 aa18.78■□□□□ 0.6
CCDC88B-206ENST00000473405 SSR1P43307 286 aaKnown RBP18.78■□□□□ 0.6
CCDC88B-206ENST00000473405 TAS2R40P59535 323 aa18.78■□□□□ 0.6
CCDC88B-206ENST00000473405 HLTFQ14527 1009 aaKnown RBP eCLIP18.78■□□□□ 0.6
CCDC88B-206ENST00000473405 ARMC12Q5T9G4 340 aa18.78■□□□□ 0.6
CCDC88B-206ENST00000473405 SPECC1LQ69YQ0 1117 aa18.78■□□□□ 0.6
CCDC88B-206ENST00000473405 FOXR1Q6PIV2 292 aa18.78■□□□□ 0.6
CCDC88B-206ENST00000473405 PCSK4Q6UW60 755 aa18.78■□□□□ 0.6
CCDC88B-206ENST00000473405 Q6ZVL8 140 aa18.78■□□□□ 0.6
CCDC88B-206ENST00000473405 NRROSQ86YC3 692 aa18.78■□□□□ 0.6
CCDC88B-206ENST00000473405 CCNJLQ8IV13 435 aa18.78■□□□□ 0.6
CCDC88B-206ENST00000473405 MAML1Q92585 1016 aa18.78■□□□□ 0.6
CCDC88B-206ENST00000473405 SEMA3CQ99985 751 aa18.78■□□□□ 0.6
CCDC88B-206ENST00000473405 PACSIN1Q9BY11 444 aa18.78■□□□□ 0.6
CCDC88B-206ENST00000473405 DPH1Q9BZG8 443 aa18.78■□□□□ 0.6
CCDC88B-206ENST00000473405 LRRN3Q9H3W5 708 aa18.78■□□□□ 0.6
CCDC88B-206ENST00000473405 PHPT1Q9NRX4 125 aaPredicted RBP18.78■□□□□ 0.6
CCDC88B-206ENST00000473405 KCTD5Q9NXV2 234 aa18.78■□□□□ 0.6
CCDC88B-206ENST00000473405 ST14Q9Y5Y6 855 aa18.78■□□□□ 0.6
CCDC88B-206ENST00000473405 RNF215Q9Y6U7 377 aa18.78■□□□□ 0.6
CCDC88B-206ENST00000473405 ASH1LQ9NR48 2969 aaKnown RBP18.78■□□□□ 0.6
CCDC88B-206ENST00000473405 KLK10O43240 276 aa18.77■□□□□ 0.6
CCDC88B-206ENST00000473405 C1QL1O75973 258 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms