RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 DEF8Q6ZN54 512 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 MAB21L3Q8N8X9 362 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 ABI2Q9NYB9 513 aaPredicted RBP13.33□□□□□ -0.28
COL6A3-209ENST00000472056 LGALS13Q9UHV8 139 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 FER1L6Q2WGJ9 1857 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 PRMT3O60678 531 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 CCNDBP1O95273 360 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 RLN1P04808 185 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 SUPT20HL2P0C7V6 817 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 TAS2R41P59536 307 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 ARF3P61204 181 aaPredicted RBP13.33□□□□□ -0.28
COL6A3-209ENST00000472056 ADAM8P78325 824 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 ARF1P84077 181 aaKnown RBP13.33□□□□□ -0.28
COL6A3-209ENST00000472056 ZNF446Q9NWS9 450 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 RFXANKO14593 260 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 FGF1P05230 155 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 SLC6A4P31645 630 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 OCLNQ16625 522 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 CPNE9Q8IYJ1 553 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 MBOAT7Q96N66 472 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 KMOO15229 486 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 PLIN3O60664 434 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 ITGA2BP08514 1039 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 MYBL2P10244 700 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 ACO1P21399 889 aaKnown RBP13.33□□□□□ -0.28
COL6A3-209ENST00000472056 GLRA2P23416 452 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 C15orf59Q2T9L4 293 aaPredicted RBP13.33□□□□□ -0.28
COL6A3-209ENST00000472056 KCNQ5Q9NR82 932 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 TSPAN16Q9UKR8 245 aa13.33□□□□□ -0.28
COL6A3-209ENST00000472056 OR10H3O60404 316 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 CALCAP01258 141 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 BAATQ14032 418 aaPredicted RBP13.32□□□□□ -0.28
COL6A3-209ENST00000472056 MPP2Q14168 576 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 HLFQ16534 295 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 EGFLAMQ63HQ2 1017 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 TMEM17Q86X19 198 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 MPP5Q8N3R9 675 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 FAM151AQ8WW52 585 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 C17orf102A2RUQ5 167 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 AIREO43918 545 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 ANGPTL1O95841 491 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 CCNYL3P0C7X3 344 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 ACOT1Q86TX2 421 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 MKS1Q9NXB0 559 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 ALOX15BO15296 676 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 PRKD3O94806 890 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 TBX4P57082 545 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 BNIP1Q12981 228 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 OVOS1Q6IE37 1185 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 KBTBD7Q8WVZ9 684 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 OR52E6Q96RD3 313 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 CTSKP43235 329 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 CACNB2Q08289 660 aaPredicted RBP13.32□□□□□ -0.28
COL6A3-209ENST00000472056 KCNA10Q16322 511 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 DPY19L1Q2PZI1 675 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 CBWD6Q4V339 395 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 CPNE2Q96FN4 548 aaPredicted RBP13.32□□□□□ -0.28
COL6A3-209ENST00000472056 TDRD3Q9H7E2 651 aaKnown RBP13.32□□□□□ -0.28
COL6A3-209ENST00000472056 ABCC13Q9NSE7 274 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 PDE10AQ9Y233 779 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 NFAT5O94916 1531 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 WRBO00258 174 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 HLA-DQA2P01906 255 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 ASLP04424 464 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 TPSB2P20231 275 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 STARD3Q14849 445 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 TPSAB1Q15661 275 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 ADNP2Q6IQ32 1131 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 FBXO30Q8TB52 745 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 RIOX1Q9H6W3 641 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 PDE2AO00408 941 aaPredicted RBP13.32□□□□□ -0.28
COL6A3-209ENST00000472056 AZIN1O14977 448 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 CDK18Q07002 472 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 ARMC12Q5T9G4 340 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 OR8H3Q8N146 312 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 ZNF548Q8NEK5 533 aaPredicted RBP13.32□□□□□ -0.28
COL6A3-209ENST00000472056 HSFY1Q96LI6 401 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 PANX1Q96RD7 426 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 MARCH7Q9H992 704 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 CXorf21Q9HAI6 301 aa13.32□□□□□ -0.28
COL6A3-209ENST00000472056 FAM237BA0A1B0GVD1 139 aa13.31□□□□□ -0.28
COL6A3-209ENST00000472056 ISPDA4D126 451 aa13.31□□□□□ -0.28
COL6A3-209ENST00000472056 TFECO14948 347 aaPredicted RBP13.31□□□□□ -0.28
COL6A3-209ENST00000472056 CBWD1Q9BRT8 395 aa13.31□□□□□ -0.28
COL6A3-209ENST00000472056 ERCC6L2Q5T890 1561 aa13.31□□□□□ -0.28
COL6A3-209ENST00000472056 FOSL1P15407 271 aa13.31□□□□□ -0.28
COL6A3-209ENST00000472056 SETMARQ53H47 684 aaPredicted RBP13.31□□□□□ -0.28
COL6A3-209ENST00000472056 VWA5B1Q5TIE3 1220 aa13.31□□□□□ -0.28
COL6A3-209ENST00000472056 TSEN2Q8NCE0 465 aaKnown RBP13.31□□□□□ -0.28
COL6A3-209ENST00000472056 RSL1D1O76021 490 aaKnown RBP13.31□□□□□ -0.28
COL6A3-209ENST00000472056 MPP1Q00013 466 aa13.31□□□□□ -0.28
COL6A3-209ENST00000472056 BMPR2Q13873 1038 aa13.31□□□□□ -0.28
COL6A3-209ENST00000472056 BBS12Q6ZW61 710 aa13.31□□□□□ -0.28
COL6A3-209ENST00000472056 CPSF7Q8N684 471 aaKnown RBP13.31□□□□□ -0.28
COL6A3-209ENST00000472056 OR2T12Q8NG77 320 aa13.31□□□□□ -0.28
COL6A3-209ENST00000472056 TTLL2Q9BWV7 592 aa13.31□□□□□ -0.28
COL6A3-209ENST00000472056 KCNE2Q9Y6J6 123 aa13.31□□□□□ -0.28
COL6A3-209ENST00000472056 OR5F1O95221 314 aa13.31□□□□□ -0.28
COL6A3-209ENST00000472056 C6orf222P0C671 652 aaPredicted RBP13.31□□□□□ -0.28
COL6A3-209ENST00000472056 TOB1P50616 345 aaPredicted RBP13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms