RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 Q6ZSR6 202 aa17.8■□□□□ 0.44
COL7A1-205ENST00000465238 SLC13A5Q86YT5 568 aaPredicted RBP17.8■□□□□ 0.44
COL7A1-205ENST00000465238 SLC22A18ASQ8N1D0 253 aa17.8■□□□□ 0.44
COL7A1-205ENST00000465238 AGAP3Q96P47 875 aa17.8■□□□□ 0.44
COL7A1-205ENST00000465238 VAT1Q99536 393 aa17.8■□□□□ 0.44
COL7A1-205ENST00000465238 FAM118BQ9BPY3 351 aa17.8■□□□□ 0.44
COL7A1-205ENST00000465238 CEP41Q9BYV8 373 aa17.8■□□□□ 0.44
COL7A1-205ENST00000465238 UCKL1Q9NWZ5 548 aa17.8■□□□□ 0.44
COL7A1-205ENST00000465238 CLCA2Q9UQC9 943 aa17.8■□□□□ 0.44
COL7A1-205ENST00000465238 PCDHGC4Q9Y5F7 938 aa17.8■□□□□ 0.44
COL7A1-205ENST00000465238 AK5Q9Y6K8 562 aa17.8■□□□□ 0.44
COL7A1-205ENST00000465238 A0A1W2PQ67 120 aa17.79■□□□□ 0.44
COL7A1-205ENST00000465238 NEMP2A6NFY4 417 aa17.79■□□□□ 0.44
COL7A1-205ENST00000465238 TSPAN6O43657 245 aa17.79■□□□□ 0.44
COL7A1-205ENST00000465238 CEP104O60308 925 aa17.79■□□□□ 0.44
COL7A1-205ENST00000465238 SOCS5O75159 536 aa17.79■□□□□ 0.44
COL7A1-205ENST00000465238 ZNF189O75820 626 aaPredicted RBP17.79■□□□□ 0.44
COL7A1-205ENST00000465238 PAK4O96013 591 aaPredicted RBP17.79■□□□□ 0.44
COL7A1-205ENST00000465238 TIMP2P16035 220 aa17.79■□□□□ 0.44
COL7A1-205ENST00000465238 PTPN3P26045 913 aa17.79■□□□□ 0.44
COL7A1-205ENST00000465238 SUOXP51687 545 aa17.79■□□□□ 0.44
COL7A1-205ENST00000465238 HNRNPKP61978 463 aaKnown RBP eCLIP17.79■□□□□ 0.44
COL7A1-205ENST00000465238 INSM1Q01101 510 aaPredicted RBP17.79■□□□□ 0.44
COL7A1-205ENST00000465238 ALG1LQ6GMV1 187 aa17.79■□□□□ 0.44
COL7A1-205ENST00000465238 KYAT3Q6YP21 454 aaKnown RBP17.79■□□□□ 0.44
COL7A1-205ENST00000465238 PTAR1Q7Z6K3 402 aaPredicted RBP17.79■□□□□ 0.44
COL7A1-205ENST00000465238 CNTD1Q8N815 330 aa17.79■□□□□ 0.44
COL7A1-205ENST00000465238 DCBLD1Q8N8Z6 715 aa17.79■□□□□ 0.44
COL7A1-205ENST00000465238 PDCD6IPQ8WUM4 868 aaKnown RBP17.79■□□□□ 0.44
COL7A1-205ENST00000465238 BMFQ96LC9 184 aa17.79■□□□□ 0.44
COL7A1-205ENST00000465238 GPR27Q9NS67 375 aa17.79■□□□□ 0.44
COL7A1-205ENST00000465238 KLHL8Q9P2G9 620 aaPredicted RBP17.79■□□□□ 0.44
COL7A1-205ENST00000465238 TCRBV7S2A1N4TA0A589 114 aa17.78■□□□□ 0.44
COL7A1-205ENST00000465238 TSPAN11A1L157 253 aa17.78■□□□□ 0.44
COL7A1-205ENST00000465238 TRAFD1O14545 582 aaPredicted RBP17.78■□□□□ 0.44
COL7A1-205ENST00000465238 FFAR2O15552 330 aa17.78■□□□□ 0.44
COL7A1-205ENST00000465238 STK10O94804 968 aaKnown RBP17.78■□□□□ 0.44
COL7A1-205ENST00000465238 GIMD1P0DJR0 217 aa17.78■□□□□ 0.44
COL7A1-205ENST00000465238 CKMT1AP12532 417 aa17.78■□□□□ 0.44
COL7A1-205ENST00000465238 CA4P22748 312 aa17.78■□□□□ 0.44
COL7A1-205ENST00000465238 RBL1P28749 1068 aa17.78■□□□□ 0.44
COL7A1-205ENST00000465238 CXCR5P32302 372 aa17.78■□□□□ 0.44
COL7A1-205ENST00000465238 ABL2P42684 1182 aa17.78■□□□□ 0.44
COL7A1-205ENST00000465238 ABCG1P45844 678 aa17.78■□□□□ 0.44
COL7A1-205ENST00000465238 RABIFP47224 123 aa17.78■□□□□ 0.44
COL7A1-205ENST00000465238 SEMG2Q02383 582 aa17.78■□□□□ 0.44
COL7A1-205ENST00000465238 NIPAL4Q0D2K0 466 aa17.78■□□□□ 0.44
COL7A1-205ENST00000465238 ELP6Q0PNE2 266 aa17.78■□□□□ 0.44
COL7A1-205ENST00000465238 WASHC5Q12768 1159 aa17.78■□□□□ 0.44
COL7A1-205ENST00000465238 SGCGQ13326 291 aa17.78■□□□□ 0.44
COL7A1-205ENST00000465238 FGL2Q14314 439 aa17.78■□□□□ 0.44
COL7A1-205ENST00000465238 UGP2Q16851 508 aa17.78■□□□□ 0.44
COL7A1-205ENST00000465238 ERAP2Q6P179 960 aa17.78■□□□□ 0.44
COL7A1-205ENST00000465238 PID1Q7Z2X4 250 aa17.78■□□□□ 0.44
COL7A1-205ENST00000465238 ARRDC2Q8TBH0 407 aa17.78■□□□□ 0.44
COL7A1-205ENST00000465238 MAIP1Q8WWC4 291 aa17.78■□□□□ 0.44
COL7A1-205ENST00000465238 ECHDC3Q96DC8 303 aa17.78■□□□□ 0.44
COL7A1-205ENST00000465238 PBKQ96KB5 322 aa17.78■□□□□ 0.44
COL7A1-205ENST00000465238 TEKT5Q96M29 485 aa17.78■□□□□ 0.44
COL7A1-205ENST00000465238 NSMCE3Q96MG7 304 aa17.78■□□□□ 0.44
COL7A1-205ENST00000465238 DCBLD2Q96PD2 775 aa17.78■□□□□ 0.44
COL7A1-205ENST00000465238 LENG8Q96PV6 779 aaPredicted RBP17.78■□□□□ 0.44
COL7A1-205ENST00000465238 C1QTNF2Q9BXJ5 285 aa17.78■□□□□ 0.44
COL7A1-205ENST00000465238 C10orf88Q9H8K7 445 aa17.78■□□□□ 0.44
COL7A1-205ENST00000465238 DNAJC28Q9NX36 388 aa17.78■□□□□ 0.44
COL7A1-205ENST00000465238 NLGN3Q9NZ94 848 aa17.78■□□□□ 0.44
COL7A1-205ENST00000465238 RAI2Q9Y5P3 530 aa17.78■□□□□ 0.44
COL7A1-205ENST00000465238 SPTY2D1-AS1A0A0U1RR47 76 aa17.77■□□□□ 0.44
COL7A1-205ENST00000465238 POM121BA6NF01 834 aa17.77■□□□□ 0.44
COL7A1-205ENST00000465238 FPGTO14772 594 aa17.77■□□□□ 0.44
COL7A1-205ENST00000465238 SCAMP1O15126 338 aa17.77■□□□□ 0.44
COL7A1-205ENST00000465238 KCNN4O15554 427 aa17.77■□□□□ 0.44
COL7A1-205ENST00000465238 HTRA2O43464 458 aaPredicted RBP17.77■□□□□ 0.44
COL7A1-205ENST00000465238 NFKBIAP25963 317 aa17.77■□□□□ 0.44
COL7A1-205ENST00000465238 CD86P42081 329 aa17.77■□□□□ 0.44
COL7A1-205ENST00000465238 GNG11P61952 73 aa17.77■□□□□ 0.44
COL7A1-205ENST00000465238 TRAF2Q12933 501 aa17.77■□□□□ 0.44
COL7A1-205ENST00000465238 SOWAHCQ53LP3 525 aaPredicted RBP17.77■□□□□ 0.44
COL7A1-205ENST00000465238 LRRC73Q5JTD7 316 aa17.77■□□□□ 0.44
COL7A1-205ENST00000465238 ARMC12Q5T9G4 340 aa17.77■□□□□ 0.44
COL7A1-205ENST00000465238 ASB12Q8WXK4 309 aa17.77■□□□□ 0.44
COL7A1-205ENST00000465238 DUSP23Q9BVJ7 150 aa17.77■□□□□ 0.44
COL7A1-205ENST00000465238 FRMD8P1Q9BZ68 369 aaPredicted RBP17.77■□□□□ 0.44
COL7A1-205ENST00000465238 SLC25A51Q9H1U9 297 aa17.77■□□□□ 0.44
COL7A1-205ENST00000465238 USP29Q9HBJ7 922 aa17.77■□□□□ 0.44
COL7A1-205ENST00000465238 GLOD4Q9HC38 313 aa17.77■□□□□ 0.44
COL7A1-205ENST00000465238 EVA1BQ9NVM1 165 aa17.77■□□□□ 0.44
COL7A1-205ENST00000465238 TRHDEQ9UKU6 1024 aa17.77■□□□□ 0.44
COL7A1-205ENST00000465238 R3HDM2Q9Y2K5 976 aaKnown RBP17.77■□□□□ 0.44
COL7A1-205ENST00000465238 SMG1Q96Q15 3661 aaKnown RBP17.77■□□□□ 0.43
COL7A1-205ENST00000465238 H3BM21 787 aa17.76■□□□□ 0.43
COL7A1-205ENST00000465238 AREL1O15033 823 aa17.76■□□□□ 0.43
COL7A1-205ENST00000465238 RAD51BO15315 384 aa17.76■□□□□ 0.43
COL7A1-205ENST00000465238 CPP00450 1065 aa17.76■□□□□ 0.43
COL7A1-205ENST00000465238 FGGP02679 453 aa17.76■□□□□ 0.43
COL7A1-205ENST00000465238 CSF2P04141 144 aa17.76■□□□□ 0.43
COL7A1-205ENST00000465238 ATP1A1P05023 1023 aaKnown RBP17.76■□□□□ 0.43
COL7A1-205ENST00000465238 NME1P15531 152 aaKnown RBP17.76■□□□□ 0.43
COL7A1-205ENST00000465238 EIF2S3P41091 472 aaKnown RBP17.76■□□□□ 0.43
COL7A1-205ENST00000465238 DUSP3P51452 185 aaPredicted RBP17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms