RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 ARL4AP40617 200 aa13.3□□□□□ -0.28
HMGB3-204ENST00000448905 RGRP47804 291 aa13.3□□□□□ -0.28
HMGB3-204ENST00000448905 ATP1A2P50993 1020 aa13.3□□□□□ -0.28
HMGB3-204ENST00000448905 RALGDSQ12967 914 aa13.3□□□□□ -0.28
HMGB3-204ENST00000448905 TRA2AQ13595 282 aaKnown RBP eCLIP13.3□□□□□ -0.28
HMGB3-204ENST00000448905 ZNF235Q14590 738 aa13.3□□□□□ -0.28
HMGB3-204ENST00000448905 LINC00303Q3SY05 128 aa13.3□□□□□ -0.28
HMGB3-204ENST00000448905 BOLA3Q53S33 107 aa13.3□□□□□ -0.28
HMGB3-204ENST00000448905 DENND2CQ68D51 928 aa13.3□□□□□ -0.28
HMGB3-204ENST00000448905 PLEKHA7Q6IQ23 1121 aa13.3□□□□□ -0.28
HMGB3-204ENST00000448905 IRF2BP2Q7Z5L9 587 aa13.3□□□□□ -0.28
HMGB3-204ENST00000448905 SLITRK4Q8IW52 837 aa13.3□□□□□ -0.28
HMGB3-204ENST00000448905 SPOCK2Q92563 424 aa13.3□□□□□ -0.28
HMGB3-204ENST00000448905 NUS1Q96E22 293 aa13.3□□□□□ -0.28
HMGB3-204ENST00000448905 COQ10AQ96MF6 247 aa13.3□□□□□ -0.28
HMGB3-204ENST00000448905 TAAR9Q96RI9 348 aa13.3□□□□□ -0.28
HMGB3-204ENST00000448905 TEX101Q9BY14 249 aa13.3□□□□□ -0.28
HMGB3-204ENST00000448905 SEMA6CQ9H3T2 930 aa13.3□□□□□ -0.28
HMGB3-204ENST00000448905 RDH14Q9HBH5 336 aa13.3□□□□□ -0.28
HMGB3-204ENST00000448905 MRPL47Q9HD33 250 aaKnown RBP13.3□□□□□ -0.28
HMGB3-204ENST00000448905 SPATS2LQ9NUQ6 558 aaKnown RBP13.3□□□□□ -0.28
HMGB3-204ENST00000448905 B4GALT6Q9UBX8 382 aa13.3□□□□□ -0.28
HMGB3-204ENST00000448905 IL17BQ9UHF5 180 aa13.3□□□□□ -0.28
HMGB3-204ENST00000448905 PHTF1Q9UMS5 762 aa13.3□□□□□ -0.28
HMGB3-204ENST00000448905 PCDHGC4Q9Y5F7 938 aa13.3□□□□□ -0.28
HMGB3-204ENST00000448905 TENM4Q6N022 2769 aa13.3□□□□□ -0.28
HMGB3-204ENST00000448905 GOLGA6CA6NDK9 693 aa13.29□□□□□ -0.28
HMGB3-204ENST00000448905 GOLGA6BA6NDN3 693 aa13.29□□□□□ -0.28
HMGB3-204ENST00000448905 H3BRJ5 948 aa13.29□□□□□ -0.28
HMGB3-204ENST00000448905 PSMD11O00231 422 aa13.29□□□□□ -0.28
HMGB3-204ENST00000448905 ECEL1O95672 775 aa13.29□□□□□ -0.28
HMGB3-204ENST00000448905 FTLP02792 175 aaPredicted RBP13.29□□□□□ -0.28
HMGB3-204ENST00000448905 GOLGA6DP0CG33 693 aa13.29□□□□□ -0.28
HMGB3-204ENST00000448905 ATP1A3P13637 1013 aa13.29□□□□□ -0.28
HMGB3-204ENST00000448905 MIPP30301 263 aa13.29□□□□□ -0.28
HMGB3-204ENST00000448905 VIPR1P32241 457 aa13.29□□□□□ -0.28
HMGB3-204ENST00000448905 CSTF2P33240 577 aaKnown RBP eCLIP13.29□□□□□ -0.283e-6■□□□□ 10.6
HMGB3-204ENST00000448905 GNPDA1P46926 289 aa13.29□□□□□ -0.28
HMGB3-204ENST00000448905 OR1D5P58170 312 aa13.29□□□□□ -0.28
HMGB3-204ENST00000448905 OGDHQ02218 1023 aa13.29□□□□□ -0.28
HMGB3-204ENST00000448905 CA9Q16790 459 aa13.29□□□□□ -0.28
HMGB3-204ENST00000448905 RALGPS1Q5JS13 557 aa13.29□□□□□ -0.28
HMGB3-204ENST00000448905 TMCO3Q6UWJ1 677 aa13.29□□□□□ -0.28
HMGB3-204ENST00000448905 DTX1Q86Y01 620 aa13.29□□□□□ -0.28
HMGB3-204ENST00000448905 ARHGAP12Q8IWW6 846 aa13.29□□□□□ -0.28
HMGB3-204ENST00000448905 AGBL5Q8NDL9 886 aa13.29□□□□□ -0.28
HMGB3-204ENST00000448905 CCL4L1Q8NHW4 92 aa13.29□□□□□ -0.28
HMGB3-204ENST00000448905 FNIP1Q8TF40 1166 aa13.29□□□□□ -0.28
HMGB3-204ENST00000448905 TRIM11Q96F44 468 aa13.29□□□□□ -0.28
HMGB3-204ENST00000448905 SCRN2Q96FV2 425 aa13.29□□□□□ -0.28
HMGB3-204ENST00000448905 NUDCD1Q96RS6 583 aa13.29□□□□□ -0.28
HMGB3-204ENST00000448905 SNRNP25Q9BV90 132 aaKnown RBP13.29□□□□□ -0.28
HMGB3-204ENST00000448905 ASPSCR1Q9BZE9 553 aa13.29□□□□□ -0.28
HMGB3-204ENST00000448905 SUDS3Q9H7L9 328 aaPredicted RBP13.29□□□□□ -0.28
HMGB3-204ENST00000448905 HAUS2Q9NVX0 235 aa13.29□□□□□ -0.28
HMGB3-204ENST00000448905 GOLGA6AQ9NYA3 693 aa13.29□□□□□ -0.28
HMGB3-204ENST00000448905 TAAR2Q9P1P5 351 aa13.29□□□□□ -0.28
HMGB3-204ENST00000448905 PCDHGA4Q9Y5G9 962 aa13.29□□□□□ -0.28
HMGB3-204ENST00000448905 SCINQ9Y6U3 715 aa13.29□□□□□ -0.28
HMGB3-204ENST00000448905 ASH1LQ9NR48 2969 aaKnown RBP13.28□□□□□ -0.28
HMGB3-204ENST00000448905 C9orf172C9J069 976 aa13.28□□□□□ -0.28
HMGB3-204ENST00000448905 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.28□□□□□ -0.28
HMGB3-204ENST00000448905 HTRA2O43464 458 aaPredicted RBP13.28□□□□□ -0.28
HMGB3-204ENST00000448905 HEXIM1O94992 359 aaKnown RBP13.28□□□□□ -0.28
HMGB3-204ENST00000448905 CPP00450 1065 aa13.28□□□□□ -0.28
HMGB3-204ENST00000448905 CEACAM5P06731 702 aa13.28□□□□□ -0.28
HMGB3-204ENST00000448905 GZMAP12544 262 aa13.28□□□□□ -0.28
HMGB3-204ENST00000448905 TEAD1P28347 426 aa13.28□□□□□ -0.28
HMGB3-204ENST00000448905 CD1CP29017 333 aa13.28□□□□□ -0.28
HMGB3-204ENST00000448905 PPM1FP49593 454 aaPredicted RBP13.28□□□□□ -0.28
HMGB3-204ENST00000448905 SLC10A7Q0GE19 358 aa13.28□□□□□ -0.28
HMGB3-204ENST00000448905 SQSTM1Q13501 440 aa13.28□□□□□ -0.28
HMGB3-204ENST00000448905 TBR1Q16650 682 aa13.28□□□□□ -0.28
HMGB3-204ENST00000448905 MARC1Q5VT66 337 aa13.28□□□□□ -0.28
HMGB3-204ENST00000448905 KCTD16Q68DU8 428 aa13.28□□□□□ -0.28
HMGB3-204ENST00000448905 RAET1GQ6H3X3 334 aa13.28□□□□□ -0.28
HMGB3-204ENST00000448905 NYAP1Q6ZVC0 841 aa13.28□□□□□ -0.28
HMGB3-204ENST00000448905 USP45Q70EL2 814 aa13.28□□□□□ -0.28
HMGB3-204ENST00000448905 HEATR4Q86WZ0 1026 aa13.28□□□□□ -0.28
HMGB3-204ENST00000448905 C17orf82Q86X59 251 aaPredicted RBP13.28□□□□□ -0.28
HMGB3-204ENST00000448905 LRRC49Q8IUZ0 686 aa13.28□□□□□ -0.28
HMGB3-204ENST00000448905 CBARPQ8N350 705 aaPredicted RBP13.28□□□□□ -0.28
HMGB3-204ENST00000448905 AHCYL2Q96HN2 611 aaKnown RBP13.28□□□□□ -0.28
HMGB3-204ENST00000448905 KCTD15Q96SI1 283 aaPredicted RBP13.28□□□□□ -0.28
HMGB3-204ENST00000448905 NAT10Q9H0A0 1025 aaKnown RBP13.28□□□□□ -0.28
HMGB3-204ENST00000448905 CDH19Q9H159 772 aa13.28□□□□□ -0.28
HMGB3-204ENST00000448905 STARD5Q9NSY2 213 aa13.28□□□□□ -0.28
HMGB3-204ENST00000448905 CWC15Q9P013 229 aaKnown RBP13.28□□□□□ -0.28
HMGB3-204ENST00000448905 KIF26BQ2KJY2 2108 aa13.28□□□□□ -0.28
HMGB3-204ENST00000448905 COL27A1Q8IZC6 1860 aaPredicted RBP13.27□□□□□ -0.28
HMGB3-204ENST00000448905 TRPM6Q9BX84 2022 aa13.27□□□□□ -0.28
HMGB3-204ENST00000448905 CAPN5O15484 640 aaPredicted RBP13.27□□□□□ -0.29
HMGB3-204ENST00000448905 ARHGAP6O43182 974 aa13.27□□□□□ -0.29
HMGB3-204ENST00000448905 PPFIA2O75334 1257 aa13.27□□□□□ -0.29
HMGB3-204ENST00000448905 PYGLP06737 847 aa13.27□□□□□ -0.29
HMGB3-204ENST00000448905 IVLP07476 585 aa13.27□□□□□ -0.29
HMGB3-204ENST00000448905 FAM87AP0C7U9 286 aa13.27□□□□□ -0.29
HMGB3-204ENST00000448905 MYBL1P10243 752 aa13.27□□□□□ -0.29
HMGB3-204ENST00000448905 CCL4P13236 92 aa13.27□□□□□ -0.29
HMGB3-204ENST00000448905 MAN1A1P33908 653 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms